osobhandClaude Opus 5.5
3000b40cf3
- libhdf5 sets cd_values[1] ("need not compress") when every field is
already full width and then stores the chunk unchanged
(H5Z__filter_nbit: `if (cd_values[1]) HGOTO_DONE`). We ignored it and
tried to unpack, so tfilters.h5 / h5stat_filters.h5 `/all` (shuffle +
szip + deflate + fletcher32 + N-Bit) failed with "nbit: packed data too
short". A type with no N-Bit parameters (cd = [3, 1, nelmts]) is now
accepted the same way.
- Class 4 (H5Z_NBIT_NOOPTYPE: enum, string, opaque, ... members) is
stored whole, 8 bits per byte; it was UnsupportedFilter(5)
(h5repack_nested_8bit_enum_deflated.h5).
N-Bit on floats was not wrong in the filter: for le_data.h5 /
Nbit_float_data_* our output equals libhdf5's decoded bytes in the file
datatype (a 20-bit float, offset 7, bias 31). h5py's values differ
because libhdf5 then converts that custom float layout to IEEE, which
our datatype reader does not do; nbit_float_matches_libhdf5_file_type_bytes
pins the filter output and the doc comment says where conversion belongs.
Tests: nbit_need_not_compress_is_passthrough,
nbit_in_multi_filter_pipeline_matches_libhdf5 (tfilters.h5 chunk, szip
feature), nbit_compound_with_enum_member_matches_libhdf5 all failed
before; nbit_float_matches_libhdf5_file_type_bytes (guard).
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
clawhdf5-format
Pure-Rust HDF5 binary format parsing and writing — no C dependencies.
Features
- Zero-copy superblock, object header, and B-tree parsing
- Chunked dataset read/write with filter pipelines
no_stdsupport (disablestdfeature)- Optional parallel reads via Rayon
- SHA-256 provenance tracking
Usage
use clawhdf5_format::Superblock;
let data = std::fs::read("data.h5").unwrap();
let sb = Superblock::from_bytes(&data).unwrap();
println!("HDF5 version {}.{}", sb.version_major(), sb.version_minor());
License
MIT