# ClawhDF5 Benchmark Results > Pure Rust. Zero C dependencies. Single file. Fast enough to forget it's there. **System:** Intel i7-12650H (10C/16T, 4.7 GHz boost) · 32 GB DDR5 · Linux 6.8.0 **Rust:** 1.96.0-nightly (2026-03-14) · `--release` profile **Date:** 2026-07-01 > **Traceability note:** the "h5bench-Equivalent I/O Benchmarks" and both > "Independent Validation: tank" sections below meet a dated, > hardware-cited, reproducible standard (explicit date, machine spec, and a > runnable command per result) — this now covers "LongMemEval Results", > "SIMD & Parallelism", "Vector Search Latency", and "Comparison to MemX" via > their tank re-runs. The remaining undated sections above (Hybrid Search, > Knowledge Graph, Memory Consolidation, Temporal Index, Write Path, Decision > Gate, Memory Strategy, Multi-Session Benchmark, Memory Footprint, > Consolidation Efficiency, Ephemeral Tier) do not yet meet that bar — this is > a known, tracked documentation gap, not a claim that those numbers are wrong. > > **Correctness note (2026-08-06).** Being dated and reproducible is necessary but > not sufficient — a number can be perfectly reproducible and still measure the > wrong thing. A methodology audit found two such cases and both have been > retracted in place: the session-level LongMemEval figures (degenerate on the > oracle variant) and the MemX retrieval comparison (mismatched granularity and > corpus). Every cross-system comparison in this file now carries an explicit > scoping caveat. Where a section states a scoring target, that declaration is the > contract — read it before citing the number. --- ## Vector Search Latency Brute-force cosine similarity over 384-dimensional embeddings (OpenAI text-embedding-3-small size). | Scale | Flat Search | Pre-norm | IVF (nprobe=10) | IVF-PQ | RAIRS | |-------|-------------|----------|-----------------|--------|-------| | **1K** | 54 µs | 62 µs | — | — | — | | **10K** | 753 µs | 706 µs | 27 µs | — | 159 µs | | **100K** | 11.4 ms | — | 1.32 ms | 1.19 ms | — | **Key insight:** At 10K records (typical agent memory), IVF search delivers **27 µs** — that's 26x faster than flat search. Even at 100K records, IVF-PQ keeps search under **1.2 ms**. ### Comparison to MemX (arxiv:2603.16171) MemX claims end-to-end search under 90ms at 100K records (Rust + libSQL + FTS5). > **Caveat — not like-for-like.** MemX's `<90 ms` is *end-to-end* search across their > full pipeline (dense embeddings + FTS5 + four-factor re-ranking). The clawhdf5 > figures below are a *single component* — raw vector search latency, excluding > embedding, keyword, fusion, and re-ranking stages. A component measured against a > full pipeline will always look favourable; the "speedup" column overstates the real > advantage by an unquantified margin and should be read as an order-of-magnitude > indication only, not a benchmark result. Matching MemX's measurement boundary is > tracked as follow-up work. | Metric | MemX (claimed, end-to-end) | ClawhDF5 (component only) | Ratio | |--------|----------------------------|---------------------------|-------| | 100K flat search | <90 ms | 11.4 ms | ~8x | | 100K IVF-PQ search | — | 1.19 ms | ~76x | | Keyword search 10K | 1,100x improvement over unindexed | 583 µs (BM25) | Comparable | --- ## SIMD & Parallelism 384-dimensional cosine similarity at 10K scale. | Strategy | Latency | vs Sequential | |----------|---------|---------------| | Sequential (scalar) | 1.07 ms | 1.0x | | SIMD (auto-vectorized) | 545 µs | **2.0x** | | Rayon (parallel) | 553 µs | **1.9x** | | Adaptive (auto-select) | 564 µs | **1.9x** | At 100K: | Strategy | Latency | |----------|---------| | SIMD | 13.7 ms | | Rayon parallel | 8.3 ms | --- ## Hybrid Search (Vector + BM25) 1K records, 384-dimensional embeddings with BM25 keyword index. | Method | Latency | Notes | |--------|---------|-------| | Weighted fusion | 198 µs | Original min-max normalization | | **RRF (k=60)** | **222 µs** | Reciprocal Rank Fusion — better quality, ~12% overhead | | BM25-only 1K | 67 µs | Keyword search alone | | Hybrid 10K | 2.04 ms | Full hybrid at 10K scale | --- ## Knowledge Graph Graph traversal and entity operations. | Operation | Scale | Latency | |-----------|-------|---------| | BFS traversal | 100 entities | 5.4 µs | | BFS traversal | 1,000 entities | 24 µs | | Spreading activation | 100 entities | 16.9 µs | | Entity resolution (Levenshtein) | 100 entities | 64 µs | | Alias resolution (short query) | 100 aliases | 10.4 µs | | Alias resolution (long query) | 100 aliases | 11.6 µs | **All graph operations complete in microseconds.** Spreading activation across 100 entities with 5 propagation steps finishes in 17 µs. --- ## Memory Consolidation Hippocampal-inspired tiered memory management. | Operation | Scale | Latency | |-----------|-------|---------| | Consolidation cycle | 100 records | 15 µs | | Consolidation cycle | 1,000 records | 164 µs | | Importance scoring | 100 records | 25 µs | A full consolidation pass over 1,000 memories (eviction + promotion across Working → Episodic → Semantic) completes in **164 µs**. This can run on every memory write without perceptible latency. --- ## Temporal Index Sorted timestamp index with binary search. | Operation | Scale | Latency | |-----------|-------|---------| | Range query | 10K timestamps | **716 ns** | | Batch insert | 10K timestamps | 4.69 ms | Sub-microsecond temporal queries. "What happened between 3pm and 5pm?" over 10K records: **716 nanoseconds.** --- ## Write Path HDF5 persistence with optional Write-Ahead Log. | Operation | Latency | Notes | |-----------|---------|-------| | Single save (no WAL) | 61 µs | Direct HDF5 write (owned-Vec IO path) | | Single save (with WAL) | 18 µs | WAL group-commit append; HDF5 write batched at flush | | Batch 100 | 723 µs | 7.2 µs per record | | Batch 1,000 | 6.17 ms | 6.2 µs per record | | WAL save (1K existing) | 539 µs | Incremental append | | WAL flush 100 entries | 787 µs | Merge WAL → HDF5 | | Session tick 1K | 5.76 ms | Full session maintenance | | Session tick 10K | 89.8 ms | Background operation | --- ## Decision Gate Trivial/non-trivial classification for memory write filtering. | Check | Latency | |-------|---------| | Trivial skip ("ok", "yes") | 61 ns | | Short phrase skip | 86 ns | | Non-trivial pass | 705 ns | | Ratio check | 488 ns | **Sub-microsecond filtering.** The gate decides whether to save a memory in under 1 µs. --- ## Memory Strategy End-to-end strategy evaluation including embedding operations. | Strategy | Condition | Latency | |----------|-----------|---------| | SaveEveryExchange (substantive) | Saves | 923 ns | | SaveEveryExchange (trivial) | Skips | 67 ns | | SaveOnSemanticShift (empty store) | Saves | 941 ns | --- ## Summary | Capability | Typical Latency | Scale | |------------|----------------|-------| | **Full memory search** | <1 ms | 10K records | | **Hybrid vector+keyword** | <200 µs | 1K records | | **Knowledge graph query** | <25 µs | 1K entities | | **Temporal range query** | <1 µs | 10K timestamps | | **Memory write** | <20 µs | Per record (WAL group-commit append) | | **Consolidation cycle** | <165 µs | 1K records | | **Importance gate** | <1 µs | Per record | **The entire memory pipeline — search, retrieve, re-rank, filter — runs in single-digit milliseconds at agent-typical scales. Fast enough that memory becomes invisible infrastructure.** --- _Latency benchmarks generated with Criterion.rs (50-100 samples per benchmark). Results may vary by hardware._ --- ## LongMemEval Results > **Scoring target declaration.** Per [arXiv 2605.24060](https://arxiv.org/abs/2605.24060), > which found that changing scoring target alone alters nDCG on 83–94% of queries and > can reverse system rankings, this section states its measurement contract explicitly: > > - **Dataset variant:** both are now reported below — the full `longmemeval_s` > haystack (**the headline number**) and `longmemeval_oracle` (evidence sessions > only, a substantially easier corpus, kept for continuity). The harness does not > trust the filename: it measures evidence-session density from the data and > labels the run from that, so a mislabelled input cannot yield a mislabelled > result. Measured density is 4.0% on `longmemeval_s` and 100.0% on the oracle. > - **Metric:** *retrieval recall.* A "hit" means the gold-labelled memory appeared in > the top-k. **No answer is generated and none is scored** — the dataset's `answer` > field is deserialized and never read. This is **not** the official LongMemEval > leaderboard metric, which is end-to-end QA accuracy (retrieve → generate → LLM > judge). Retrieval recall reported as QA accuracy typically overstates by 20–30 points. > - **Granularity:** turn-level = the returned memory's source turn had `has_answer == true`. > - **k = 10**, n = 500. > - **Retrieval mode:** all three are reported below. Historically the bench passed > zero-vector embeddings with `vector_weight=0.0`, so the HNSW/vector stage was > inert and every published number was BM25 alone. Real `all-MiniLM-L6-v2` > embeddings are now available via `--features embeddings --embeddings `, > and BM25-only / vector-only / hybrid are each measured separately. **Mode:** BM25-only retrieval — zero embeddings, `vector_weight=0.0`, `keyword_weight=1.0` > **Run:** `cargo run --release --bin longmemeval_bench -- benchmarks/longmemeval/longmemeval_s_cleaned.json` > (~70 s for all 500 questions on the tank reference machine). Omit the path for the > oracle variant; add `--limit N` for an evenly-strided subsample. ### Full haystack — `longmemeval_s`, n=500 (the number to cite) 47.7 sessions and 493.5 turns per question; 4.0% of haystack sessions are evidence sessions, so retrieval has to actually discriminate. | Metric | Turn-level | Session-level | |--------|-----------|---------------| | Hit@1 | 53.8% | 86.2% | | Hit@5 | **75.0%** | **93.6%** | | Hit@10 | 81.6% | 96.6% | | MRR | 0.6320 | 0.8948 | Session-level is reported here because on this corpus it is meaningful — unlike on the oracle variant, where it was degenerate and was retracted (below). At 4.0% evidence density a session-level hit reflects discrimination rather than corpus shape. Per-type, session-level: `single-session-assistant` 100.0% Hit@1 (n=56), `knowledge-update` 96.2% (n=78), `single-session-user` 94.3% (n=70), `multi-session` 84.2% (n=133), `temporal-reasoning` 84.2% (n=133), and `single-session-preference` 33.3% (n=30) — the one category where BM25 clearly struggles, since a preference question's evidence rarely shares vocabulary with the question. ### Retrieval mode ablation — full haystack, n=500 Real 384-d `all-MiniLM-L6-v2` embeddings, 190,015 unique texts encoded once on an RTX 5060 Ti (~13 min; the same work on the 8-core CPU was still unfinished after 30 minutes, so the GPU path is not a convenience here). Turn-level: | Mode | Hit@1 | Hit@5 | Hit@10 | MRR | |------|-------|-------|--------|-----| | BM25 only (`0.0`/`1.0`) | **53.8%** | 75.0% | 81.6% | **0.6320** | | Vector only (`1.0`/`0.0`) | 36.0% | 71.8% | 81.6% | 0.5027 | | Hybrid (`0.7`/`0.3`) | 44.4% | **79.2%** | **86.0%** | 0.5868 | Session-level: | Mode | Hit@1 | Hit@5 | Hit@10 | MRR | |------|-------|-------|--------|-----| | BM25 only | 86.2% | 93.6% | 96.6% | 0.8948 | | Vector only | 85.4% | 94.2% | 96.6% | 0.8901 | | Hybrid | **88.2%** | **95.8%** | **97.8%** | **0.9158** | ### Weight sweep — full haystack, n=500 `0.7/0.3` was a documented default, never a searched one. Sweeping `vector_weight` from 0.0 to 1.0 (`--sweep`, reusing the one-time embedding table) shows it is not merely suboptimal but **strictly dominated**: | vector / keyword | Hit@1 | Hit@5 | Hit@10 | MRR | session Hit@5 | |---|---|---|---|---|---| | 0.0 / 1.0 (BM25) | **53.8%** | 75.0% | 81.6% | 0.6320 | 93.6% | | 0.1 / 0.9 | 53.2% | 77.4% | 83.8% | 0.6374 | 95.0% | | 0.2 / 0.8 | 53.6% | 78.2% | 85.6% | 0.6440 | 95.4% | | 0.3 / 0.7 | 53.2% | 78.8% | 87.2% | **0.6463** | 96.0% | | **0.4 / 0.6** | 51.6% | **81.4%** | 87.8% | 0.6429 | 96.8% | | 0.5 / 0.5 | 48.2% | **81.4%** | **88.2%** | 0.6234 | **97.4%** | | 0.6 / 0.4 | 46.6% | 79.8% | 87.4% | 0.6069 | 96.6% | | 0.7 / 0.3 *(old default)* | 44.4% | 79.2% | 86.0% | 0.5868 | 95.8% | | 0.8 / 0.2 | 40.6% | 76.2% | 85.4% | 0.5571 | 95.2% | | 0.9 / 0.1 | 37.8% | 73.4% | 84.6% | 0.5289 | 94.2% | | 1.0 / 0.0 (vector) | 36.0% | 71.8% | 81.6% | 0.5027 | 94.2% | **`0.4/0.6` beats `0.7/0.3` on every metric at both granularities** — Hit@1 +7.2pp, Hit@5 +2.2, Hit@10 +1.8, MRR +0.056. There is no trade being made; the old default was simply on the wrong side of the peak. **`0.4/0.6` is the recommended setting**, with `0.3/0.7` preferable if rank-1 precision matters most (it takes the best MRR in the sweep and gives up only 0.6pp of Hit@1 against pure BM25). **Correction.** An earlier revision of this section, measuring only `0.7/0.3`, concluded that fusion "buys deeper recall and pays for it at rank 1" and advised callers taking a single top hit to prefer BM25. That was an artifact of the badly-chosen weight, not a property of fusion. At `0.3/0.7` hybrid *beats* BM25 on MRR (0.6463 vs 0.6320) and on Hit@5 (78.8% vs 75.0%) while costing 0.6pp of Hit@1. The advice below is corrected accordingly. **Hybrid wins, once the weights are right.** At the old `0.7/0.3` the picture looked like a trade: best at Hit@5 and Hit@10, worse than BM25 at Hit@1 and MRR. The sweep above shows that was the weight, not fusion. At `0.4/0.6` hybrid leads Hit@5 and Hit@10 outright; at `0.3/0.7` it also leads MRR and is within 0.6pp of BM25 at Hit@1. Both dominate `0.7/0.3`. The rows below are kept at the three original settings because they are what the mode ablation measured — read them as "the shape of each stage in isolation", and take the operating point from the sweep. The same pattern shows up independently in omni-cortex's four-signal RRF ablation, where adding BM25 to a dense retriever raised nDCG@5 while lowering Hit@1 and MRR. Two different codebases, two different fusion schemes, same direction. Vector-only being *worse* than BM25 at every turn-level cutoff except Hit@10 is worth stating plainly rather than hiding: LongMemEval questions share substantial vocabulary with their evidence turns, which is close to the best case for lexical matching, and MiniLM at 384 dimensions is a small embedding model. > **Run:** `cargo run --release --bin longmemeval_bench --features embeddings -- \ > benchmarks/longmemeval/longmemeval_s_cleaned.json --embeddings weights/all-minilm-l6-v2` > For the GPU path use `--features embeddings-cuda`. That requires `nvcc` on > `PATH` at *build* time — cudarc's build script shells out to it. The toolkit > installs to `/usr/local/cuda/bin`, which many distributions do not export; > check with `nvcc --version` and, if it is missing, add it somewhere every > shell reads (for zsh that is `~/.zshenv`, not `~/.zshrc`, since build tooling > runs non-interactively). The device is selected at runtime with a CPU > fallback, so a machine without CUDA still produces correct numbers — just far > more slowly, and the bench says so on startup. > > Weights: `huggingface.co/sentence-transformers/all-MiniLM-L6-v2` — place > `model.safetensors` and `tokenizer.json` in the `--embeddings` directory. ### Oracle variant — `longmemeval_oracle`, n=500 (easier corpus, kept for continuity) | Metric | ClawhDF5 (BM25-only, oracle variant) | |--------|--------------------------------------| | Hit@1 | 52.6% | | Hit@5 | **84.4%** | | Hit@10 | 90.4% | | MRR | 0.6597 | Turn-level. The 9.4-point gap between this and the full haystack's 75.0% is the price of the harder corpus, and is the reason oracle-only numbers should not be presented as LongMemEval results. Session-level figures on this variant are degenerate — see below. With real embeddings the same oracle corpus gives BM25-only 84.2% / vector-only 80.4% / hybrid **85.2%** Hit@5 turn-level — hybrid ahead at Hit@5 and Hit@10 and behind at Hit@1, matching the full-haystack pattern above. (BM25-only reads 84.2% here against 84.4% with zero embedding vectors: one question of 500 changes rank, with MRR identical at 0.6597. On the full haystack the two agree exactly.) ### Retracted: session-level recall and the MemX comparison Earlier revisions of this file reported session-level Hit@1/5/10 of **100.0%** with MRR **1.0000**, uniform across all six question types, and claimed clawhdf5 "outperforms MemX at turn-level retrieval (84.4% vs 51.6%)". **Both are withdrawn.** **The session-level numbers are a degenerate artifact.** On the `longmemeval_oracle` variant, the ingested haystack for a question consists essentially only of that question's evidence sessions. Every returned document therefore belongs to an answer session, so session-level hit rate is ≈1.0 at rank 0 *by construction* — which is exactly why the result was a uniform 100.0% across every question type. It measured the shape of the corpus, not the retriever. **The MemX comparison was not like-for-like on two independent axes.** MemX ([arxiv:2603.16171](https://arxiv.org/abs/2603.16171)) reports Hit@5 = 51.6% / MRR = 0.380 at **fact-level granularity over 220,349 fact-level records drawn from 19,195 sessions**, and explicitly notes that fact-level "doubl[es] session-level performance." Our 84.4% is **turn-level, on the oracle subset**. Different retrieval granularity, and a corpus smaller by orders of magnitude. A higher number on an easier corpus at a different granularity is not an outperformance claim, and it should not have been presented as one. The full-haystack half of that gap is now closed: the section above reports `longmemeval_s` over all 500 questions. The **granularity** mismatch remains — MemX measures fact-level, we measure turn-level and session-level — so no cross-system claim is made here even now. Matching granularity would require fact-level extraction over the haystack, which this harness does not do. ### Search Latency (LongMemEval, n=500 queries) | Metric | Latency | |--------|---------| | avg | 1,004 µs | | p50 | 1,017 µs | | p95 | 2,031 µs | | p99 | 2,912 µs | Sub-millisecond median search across variable-length chat histories. --- ## Multi-Session Benchmark (MemoryArena) **Dataset:** Deterministic synthetic conversations — 50 sessions × ~20 turns = 999 turns **Topics:** Personal info, food preferences, music, travel, work/schedule, hobbies **Queries:** 35 questions across 4 types > **Run:** `cargo run --release --bin memory_arena` ### Results by Query Type | Query Type | N | Hit@1 | Hit@5 | Hit@10 | MRR | Avg Latency | |------------|---|-------|-------|--------|-----|-------------| | single-session | 25 | 40.0% | 92.0% | 100.0% | 0.5788 | 7,853 µs | | multi-session | 5 | 40.0% | 60.0% | 80.0% | 0.5333 | 7,887 µs | | temporal | 3 | 33.3% | 66.7% | 66.7% | 0.5000 | 7,899 µs | | knowledge-update | 2 | 0.0% | 50.0% | 50.0% | 0.2500 | 7,899 µs | | **OVERALL** | **35** | **37.1%** | **82.9%** | **91.4%** | **0.5468** | **7,870 µs** | **Key findings:** - Hit@10 of 91.4% across all query types with BM25-only (no embeddings) - Single-session recall strongest at 100% Hit@10 - Knowledge-update hardest (requires temporal disambiguation) — would improve significantly with vector similarity - Latency dominated by BM25 index build over 999 turns (~7.9 ms) --- ## Memory Footprint HDF5 file size at various record counts — 384-dimensional embeddings, 200-char text. > **Run:** `cargo run --release --bin footprint_bench` ### Uncompressed (no WAL) | Records | File Size | Raw Data | Bytes/Record | Throughput | |---------|-----------|----------|--------------|------------| | 100 | 176.4 KB | 169.5 KB | 1.8 KB | 100,000 rec/s | | 1K | 1.7 MB | 1.7 MB | 1.8 KB | 109,643 rec/s | | 10K | 17.0 MB | 16.6 MB | 1.7 KB | 118,100 rec/s | | 50K | 85.0 MB | 82.8 MB | 1.7 KB | 110,723 rec/s | | 100K | 169.8 MB | 165.6 MB | 1.7 KB | 111,422 rec/s | **1.7 KB per record** — HDF5 overhead is near-zero. Ingestion throughput exceeds **100K records/sec**. ### With Gzip Compression (level 6) | Records | Compressed | Ratio | Bytes/Record | |---------|------------|-------|--------------| | 100 | 31.5 KB | 5.37x | 323 B | | 1K | 277.1 KB | 6.12x | 283 B | | 10K | 2.7 MB | 6.17x | 281 B | | 50K | 13.4 MB | 6.17x | 281 B | | 100K | 26.9 MB | 6.15x | 282 B | **6.2x compression ratio** — 100K agent memories in 27 MB compressed. ### Text Length Comparison (10K records, no compression) | Text Length | File Size | Bytes/Record | Throughput | |-------------|-----------|--------------|------------| | short (50 chars) | 15.6 MB | 1.6 KB | 177,925 rec/s | | medium (200 chars) | 17.0 MB | 1.7 KB | 172,152 rec/s | | long (1000 chars) | 24.6 MB | 2.5 KB | 157,807 rec/s | ### WAL Overhead (1K records) | Mode | File Size | Ingest Time | Overhead | |------|-----------|-------------|----------| | No WAL | 1.7 MB | 5.7 ms | — | | With WAL | 1.7 MB + 9 B WAL | 5.3 ms | ±8% (negligible) | --- ## Consolidation Efficiency Hippocampal-inspired memory consolidation improves both retrieval quality and search speed. > **Run:** `cargo run --release --bin consolidation_efficiency` ### Retrieval Quality Before vs. After Consolidation **Setup:** 1,000 records (10 signal + 990 noise), working_capacity=100 | Metric | Before | After | Delta | |--------|--------|-------|-------| | Records in store | 1,000 | 100 | −90% | | Hit@1 | 100.0% | 100.0% | — | | Hit@5 | 100.0% | 100.0% | — | | Hit@10 | 100.0% | 100.0% | — | | MRR | 1.0000 | 1.0000 | — | | Search latency | 2,752 µs | 312 µs | **8.8x faster** | Signal records survive consolidation because they are accessed 15+ times, giving them high decay scores. 900 noise records evicted, search speeds up 8.8x, and **zero quality loss** — perfect recall maintained. ### Consolidation Cycle Time | Records | Cycle Time | Evictions | Promotions | |---------|-----------|-----------|------------| | 100 | 21 µs | 100 | 0 | | 1K | 345 µs | 1,000 | 0 | | 10K | 17.3 ms | 10,000 | 0 | --- ## Ephemeral Tier (Redis Comparison) In-memory key-value store with TTL, capacity eviction, and embedding search. No network hop, no serialization — direct HashMap operations. > **Run:** `cargo run --release --bin ephemeral_perf` ### Latency Comparison | Operation | clawhdf5 Ephemeral | Redis (single-node)¹ | Speedup | |-----------|-------------------|---------------------|---------| | SET | **356 ns/op** | ~25,000 ns/op | **70x** | | GET (hit) | **179 ns/op** | ~25,000 ns/op | **140x** | | GET (miss) | **62 ns/op** | ~25,000 ns/op | **403x** | | DELETE | **124 ns/op** | ~25,000 ns/op | **202x** | | SET+embedding | **268 ns/op** | N/A | — | > ¹ Redis latency includes network round-trip (loopback). clawhdf5 ephemeral is in-process — no network. ### Throughput | Operation | ops/sec | |-----------|---------| | SET | 2,810,649 | | GET | 5,584,684 | | DELETE | 8,093,731 | | SET+EMB (384d) | 3,725,877 | ### Embedding Search (ephemeral tier) | Scale | Latency | |-------|---------| | 10K entries @ 384d | 2.9 ms/query | --- ## World-Model Sample Loading (vs h5py / stable-worldmodel shape) Reproduces the access pattern of `stable-worldmodel`'s HDF5 dataloader ([arXiv 2605.21800](https://arxiv.org/abs/2605.21800), LeCun/Balestriero group), which supports HDF5 as one of three native formats and measures generic HDF5 at **1,416-1,474 samples/s** (vs Lance 4,815) for per-frame sample loading. This benchmark measures **clawhdf5 vs h5py on the same machine and the same file**, so the comparison is hardware-controlled. **Absolute numbers are not comparable to the paper's** - different hardware (AMD Ryzen 7 7800X3D, local NVMe, warm page cache), smaller frames, and no torch-tensor / transform step. Only the clawhdf5-vs-h5py ratio *here* is a controlled result. The workload is the dataloader shape: a `(N, H, W, C)` uint8 observation dataset (20,000 x 64x64x3 = 246 MB), each frame read once per pass in a fixed shuffled (random-access) order, 10 passes. Both read a **file written by h5py** - clawhdf5 parsing an externally-produced HDF5 file is itself the interop result. h5py opens SWMR with a 256 MB chunk cache, exactly `stable-worldmodel`'s `HDF5Dataset`; it materialises each frame as a numpy array (`d[i]`) and sums it. clawhdf5 mmaps once, takes a zero-copy `&[u8]` over the contiguous dataset, and indexes frame `i` as a subslice. | Reader | samples/sec (median of 3) | vs h5py | |--------|---------------------------|---------| | **clawhdf5** (zero-copy view) | **593,000** | **8.1x** | | **clawhdf5** (materialised copy per frame) | **518,000** | **7.1x** | | h5py (swmr, 256 MB cache) | 73,000 | 1.0x | The **materialised-copy row is the fair, equal-work comparison** - it `to_vec()`s every frame so clawhdf5 pays the same per-frame allocation h5py does, and it is still **7.1x faster**. That the copy costs almost nothing (518k vs 593k) shows the h5py gap is **per-frame call overhead** (Python + library dispatch), not data movement. This is an in-page-cache measurement: it isolates the read-path overhead both libraries add on top of the OS, which is the thing that differs - not disk bandwidth, which is shared. Reproduce (`benchmarks/`): ```bash python benchmarks/gen_worldmodel_frames.py /tmp/wm_frames.h5 20000 cargo run --release -p clawhdf5-bench --example worldmodel_sampling -- /tmp/wm_frames.h5 10 cargo run --release -p clawhdf5-bench --example worldmodel_sampling -- /tmp/wm_frames.h5 10 --copy python benchmarks/bench_worldmodel_h5py.py /tmp/wm_frames.h5 10 ``` Measured 2026-08-07 on tank (Ryzen 7 7800X3D, 246 MB dataset in page cache). ## Cross-Platform Notes > **Run:** `./benchmarks/cross_platform.sh [--full] [--output results.json]` ### Measured Platforms | Platform | CPU | 10K IVF Search | Notes | |----------|-----|----------------|-------| | Linux x86_64 | Intel i7-12650H (10C, 4.7 GHz) | 27 µs | Primary CI target | | macOS aarch64 | Apple M3 Max (14C) | ~18 µs | ~33% faster via NEON SIMD | ### Reproducibility ```bash rustup override set nightly # Latency benchmarks (Criterion) cargo bench -p clawhdf5-agent # Full benchmark suite cargo run --release --bin longmemeval_bench cargo run --release --bin memory_arena cargo run --release --bin footprint_bench cargo run --release --bin consolidation_efficiency cargo run --release --bin ephemeral_perf ``` --- ## h5bench-Equivalent I/O Benchmarks Criterion harness mirroring h5bench serial workloads. clawhdf5 benchmarks dated 2026-07-01; libhdf5 1.14.6 head-to-head comparison dated 2026-06-30 (same hardware, same Criterion harness). ```bash cargo bench -p clawhdf5-bench # clawhdf5-only cargo bench -p clawhdf5-bench --features libhdf5-compare # head-to-head ``` ### Sequential Read Throughput Both read a 1-D contiguous f32 dataset. clawhdf5 parses from `Vec` (zero-copy); libhdf5 reads from a temp file including `open` + `read` + `close` overhead. | Workload | n=1K | n=10K | n=100K | |----------|------|-------|--------| | **clawhdf5** f32 | 634 ns / **5.9 GiB/s** | 2.44 µs / **15.3 GiB/s** | 24.5 µs / **15.2 GiB/s** | | libhdf5 f32 | 45.2 µs / 85 MiB/s | 47.8 µs / 799 MiB/s | 73.9 µs / 5.0 GiB/s | | **Speedup** | **71×** | **20×** | **3.0×** | | clawhdf5 f64 | 743 ns / **10.0 GiB/s** | 4.17 µs / **17.8 GiB/s** | 43.3 µs / **17.2 GiB/s** | | clawhdf5 from_disk (f64, OS I/O) | — | 10.1 µs / **7.4 GiB/s** | 77.6 µs / **9.6 GiB/s** | | clawhdf5 hyperslab (f64, 10% slice) | — | 4.09 µs / **1.8 GiB/s** | 50.1 µs / **1.5 GiB/s** | libhdf5 f64 comparison excluded — clawhdf5's datatype encoding differs from libhdf5's (known gap), making cross-format reads unreliable for comparison. ### Chunked Read Throughput | Matrix size | Latency | Throughput | |-------------|---------|-----------| | 64×64 f32 | 6.39 µs | **2.4 GiB/s** | | 256×256 f32 | 41.7 µs | **5.9 GiB/s** | | 512×512 f32 | 176 µs | **5.5 GiB/s** | ### Sequential Write Throughput Both write to disk. At 100K elements both converge on the OS `write()` syscall ceiling. | Workload | n=1K | n=10K | n=100K | |----------|------|-------|--------| | **clawhdf5** f32 | 9.44 µs / **404 MiB/s** | 25 µs / **1.49 GiB/s** | 228 µs / **1.63 GiB/s** | | libhdf5 f32 | 77.9 µs / 49 MiB/s | 87.8 µs / 435 MiB/s | 214 µs / 1.74 GiB/s | | **Speedup** | **8.2×** | **3.5×** | **≈ tie** | | clawhdf5 f64 embeddings | 6.50 µs (n=128) | 8.67 µs (n=512) / **450 MiB/s** | 10.27 µs (n=1K) / **761 MiB/s** | ### Chunked Write: Codec Comparison (with auto-shuffle) Auto-shuffle is applied before all compression codecs by default — AoS→SoA byte transpose, implements byte-grouping pre-filter per arXiv:2506.18062. Shuffle dramatically improves throughput for float/int data by creating long runs of similar bytes. | Matrix size | Zstd-3 + shuffle | Deflate-6 + shuffle | Speedup | |-------------|-----------------|---------------------|---------| | 32×32 f32 | 48 µs / **81 MiB/s** | 39 µs / **100 MiB/s** | Deflate 1.23× faster (small chunk) | | 128×128 f32 | **148 µs / 422 MiB/s** | 153 µs / **407 MiB/s** | Parity | | 512×512 f32 | **1.34 ms / 748 MiB/s** | 1.39 ms / **719 MiB/s** | Zstd 1.04× faster | Impact of auto-shuffle vs no-shuffle baseline: | Matrix size | Zstd-3 speedup | Deflate-6 speedup | |-------------|----------------|-------------------| | 32×32 | +19% | +38% | | 128×128 | +25% | **+204%** | | 512×512 | +25% | **+157%** | Both codecs perform at parity at large sizes (~720–750 MiB/s). Use `.with_zstd(3)` or `.with_deflate(6)` for write-heavy workloads. Use `.without_shuffle()` only for byte arrays or data that doesn't benefit from AoS→SoA transposition. ### Chunked Write vs libhdf5 (deflate-6) clawhdf5 compresses all chunks in memory and issues a single `write()`. libhdf5 flushes each chunk individually via its Virtual File Layer (one `pwrite()` per chunk). | Matrix | clawhdf5 deflate-6 + shuffle | libhdf5 deflate-6 | Speedup | |--------|------------------------------|-------------------|---------| | 32×32 f32 | 39 µs / 100 MiB/s | 172 µs / 23 MiB/s | **4.4×** | | 128×128 f32 | 153 µs / 407 MiB/s | 3,150 µs / 20 MiB/s | **20.6×** | | 512×512 f32 | 1,390 µs / 719 MiB/s | 53,300 µs / 19 MiB/s | **38.4×** | The 32×32 speedup (4.4×) is lower than the 512×512 speedup (38.4×) because shuffle adds overhead that dominates at 4 KB chunks. libhdf5 was benchmarked without shuffle. The speedup compounds with matrix size because libhdf5's per-chunk VFL overhead is proportional to chunk count while clawhdf5's single-pass cost is constant. ### Codec Comparison: Pcodec vs Zstd-3 Pcodec (arXiv:2502.06112) is a pure-Rust lossless numerical codec with 30–94% better compression ratio than Zstd for f32/f64 columns. Both sides benchmarked **without** auto-shuffle here (shuffle degrades Pcodec which handles byte organization internally; Zstd-3 without shuffle numbers shown for an apples-to-apples comparison). | Matrix size | Pcodec | Zstd-3 (no shuffle) | Winner | |-------------|--------|---------------------|--------| | 32×32 f32 | 95 µs / **41 MiB/s** | 57 µs / **68 MiB/s** | Zstd-3 (1.66×) | | 128×128 f32 | 528 µs / **118 MiB/s** | 179 µs / **349 MiB/s** | Zstd-3 (2.95×) | | 512×512 f32 | 1.69 ms / **591 MiB/s** | 1.64 ms / **610 MiB/s** | Parity (3% diff) | Pcodec's fixed per-chunk distributional analysis overhead (~400 µs) dominates at 32×32 (4 KB). At 512×512 (1 MB) the speeds converge. **Pcodec's advantage is compression ratio, not encode speed** — less data on disk means faster reads and lower storage cost. Enable with `.with_pcodec()` for write-once/read-many workloads (embedding archives, scientific datasets). ### Metadata Throughput clawhdf5 accumulates all metadata in memory and serializes in one pass. libhdf5 acquires a global file mutex and flushes to disk on every attribute write or group creation. **Attributes and datasets** (k = attribute or dataset count): | Workload | k=4 | k=16 | k=64 | k=128 | |----------|-----|------|------|-------| | **clawhdf5** attrs_write (i64) | 8.05 µs / 494 Kop/s | 17.2 µs / 932 Kop/s | 49.2 µs / 1.30 Mop/s | 87.3 µs / 1.47 Mop/s | | libhdf5 attrs_write | 100 µs / 40 Kop/s | 170 µs / 94 Kop/s | 472 µs / 136 Kop/s | 929 µs / 138 Kop/s | | **Speedup** | **12.4×** | **9.9×** | **9.6×** | **10.6×** | | clawhdf5 attrs_read | 1.06 µs / 3.78 Mop/s | 3.64 µs / 4.39 Mop/s | 15.7 µs / 4.08 Mop/s | 31.3 µs / 4.09 Mop/s | | clawhdf5 string_attrs (write+read) | 5.17 µs / 774 Kop/s | 16.5 µs / 967 Kop/s | 33.6 µs / 951 Kop/s | — | | clawhdf5 multi_dataset_write | 10.1 µs / 397 Kop/s | 31.5 µs / 508 Kop/s | 104 µs / 614 Kop/s | — | **Groups** (k = group count): | Workload | k=4 | k=16 | k=32 | k=64 | |----------|-----|------|------|------| | **clawhdf5** groups_create | 12.1 µs / 330 Kop/s | 33.7 µs / 475 Kop/s | 66.7 µs / 480 Kop/s | 121 µs / 529 Kop/s | | libhdf5 groups_create | 140 µs / 28 Kop/s | 433 µs / 37 Kop/s | 690 µs / 46 Kop/s | 1,340 µs / 48 Kop/s | | **Speedup** | **11.6×** | **12.8×** | **9.5×** | **11.1×** | | clawhdf5 groups_traverse | 664 ns / 6.0 Mop/s | 3.55 µs / 4.5 Mop/s | 4.87 µs / 6.6 Mop/s | 10.6 µs / 6.0 Mop/s | --- ## vs libhdf5 Summary | Workload | clawhdf5 | libhdf5 | Speedup | |----------|----------|---------|---------| | Sequential read, 1K f32 | 634 ns | 45.2 µs | **71×** | | Sequential read, 100K f32 | 24.5 µs · 15.2 GiB/s | 73.9 µs · 5.0 GiB/s | **3.0×** | | Sequential write, 100K f32 | 228 µs · 1.63 GiB/s | 214 µs · 1.74 GiB/s | **≈ tie** | | Chunked write deflate-6, 512×512 | 1,390 µs · 719 MiB/s | 53,300 µs · 19 MiB/s | **38.4×** | | Attribute write, 128 attrs | 87.3 µs · 1.47 Mop/s | 929 µs · 138 Kop/s | **10.6×** | | Group create, 64 groups | 121 µs · 529 Kop/s | 1,340 µs · 48 Kop/s | **11.1×** | ### Why the Gaps **Metadata (10–13×):** libhdf5 was designed for MPI parallel filesystems where every metadata write must be immediately visible to other processes. It acquires a global file mutex and flushes to disk per operation. clawhdf5 builds the entire file in memory and writes it in one shot — no locking, no flushing, no C heap allocation per message. **Chunked compressed write (4–38×):** libhdf5 writes each chunk individually through its VFL (Virtual File Layer), one `pwrite()` per chunk. clawhdf5 compresses all chunks in memory (Rayon parallel when > 2 chunks), lays them out contiguously, and issues a single `write()`. The speedup compounds with matrix size: libhdf5's per-chunk overhead is proportional to chunk count while clawhdf5's architectural cost is constant. **Small reads (20–71×):** libhdf5's per-open overhead (chunk cache init, SWMR lock, metadata read) dominates at sub-millisecond payloads. clawhdf5 has no global state — `File::from_bytes()` starts parsing immediately. **Large contiguous writes (≈ tie at 100K):** Both are bottlenecked by the OS `write()` syscall to the page cache. There is no algorithmic headroom above ~1.7 GiB/s on this hardware. ### Caveats - libhdf5 f64 read comparison excluded — clawhdf5's f32 datatype encoding differs from libhdf5's (known compatibility gap). f64 results are clawhdf5-only. - Serial benchmarks. clawhdf5 uses Rayon for chunk compression when > 2 chunks; that parallelism is already reflected in the chunked write numbers. - clawhdf5 reads from `Vec` (zero-copy from mmap in production); libhdf5 reads from a temp file. This gives clawhdf5 a structural read advantage that reflects realistic API usage. --- ## Independent Validation: tank (Ryzen 7 7800X3D), 2026-08-03 The `vs libhdf5 Summary` numbers above were re-run on a second, independently administered machine (`tank`: AMD Ryzen 7 7800X3D, 8C/16T, Ubuntu 26.04, libhdf5 1.14.6 via `apt`) to confirm they reproduce off the original i7-12650H box, and to add benchmark coverage for two claims that a documentation review found were not traceable to any dated benchmark run (see git history around 2026-08-03 for context). This section documents both. ### Reproduction of the vs-libhdf5 Summary table | Workload | clawhdf5 (tank) | libhdf5 (tank) | Speedup (tank) | Speedup (i7-12650H, above) | |----------|-----------------|-----------------|----------------|------------------------------| | Sequential read, 1K f32 | 553 ns | 44.2 µs | **79.9×** | 71× | | Sequential read, 100K f32 | 23.3 µs | 63.6 µs | **2.7×** | 3.0× | | Sequential write, 100K f32 | 210 µs | 189 µs | **≈ tie** (clawhdf5 ~11% behind) | ≈ tie (clawhdf5 ~7% behind) | | Chunked write deflate-6, 512×512 | 1.44 ms | 65.0 ms | **45.3×** | 38.4× | | Attribute write, 128 attrs | 85.2 µs | 877 µs | **10.3×** | 10.6× | | Group create, 64 groups | 130 µs | 1.37 ms | **10.6×** | 11.1× | Five of six rows land within ~15% of the original i7-12650H figures — consistent with normal cross-machine variance, not a methodology artifact. The chunked-write row moved further (38.4× → 45.3×, +18%): tank's libhdf5 per-chunk write cost scales worse relative to its own sequential-write throughput than on the i7, likely IPC/ memory-subsystem dependent. Both figures are real and dated; we report both rather than picking one. ### New coverage: replacing the retracted "metadata parse / 308×" and "zero-copy mmap / 313 ns" claims An earlier README revision cited `19 ns` vs `2,080 µs` (labeled, incorrectly, `308×`) for "metadata parse," and `313 ns` for "zero-copy mmap" — neither figure traced to any benchmark in this file. Both have been retracted from the README. In their place, two new Criterion benchmarks were added (`crates/clawhdf5-bench/benches/h5bench_meta.rs`, `crates/clawhdf5-bench/benches/h5bench_read.rs`) and run on tank: **`metadata_open_from_disk`** — opens a small file from disk (`std::fs::read` / `hdf5::File::open`) and resolves one attribute. Both sides pay real OS I/O, unlike the retracted claim. | Operation | clawhdf5 | libhdf5 | Speedup | |-----------|----------|---------|---------| | Open file + read 1 attribute | 4.01 µs | 39.3 µs | **9.8×** | **`metadata_parse_in_memory`** (clawhdf5-only) — times `File::from_bytes()` alone, given bytes already resident in memory, i.e. header-parse cost with disk I/O excluded. There is no fair libhdf5-side equivalent (its API has no "parse from an in-memory buffer, skip the OS open" path), so this is reported standalone rather than as a speedup multiple — this is the honest version of what the old `19 ns` number was trying to claim. | Operation | clawhdf5 (in-memory, no I/O) | |-----------|------------------------------| | Parse superblock + resolve 1 attribute | 549 ns | **`read_zerocopy_mmap`** — opens via `MmapFile` and reads an f64 dataset through `read_f64_zerocopy()`, summing every element to force the mapped pages to actually fault in (returning only a slice length, as an earlier draft of this benchmark did, would repeat the exact "measures nothing" mistake being fixed here). | n (f64 elements) | clawhdf5 mmap (zerocopy, page-fault-forced) | clawhdf5 (`Vec` copy) | libhdf5 (disk open + copy) | |-------------------|----------------------------------------------|----------------------------|------------------------------| | 1,000 | 7.86 µs | 4.50 µs | 44.2 µs | | 10,000 | 19.0 µs | 9.53 µs | 47.1 µs | | 100,000 | 112 µs | 72.0 µs | 81.2 µs | Honest result: at these sizes, forcing full materialization through the mmap path is **not** faster than the plain `Vec` copy path — `mmap()`/page-fault overhead per call outweighs the copy it avoids. This contradicts the retracted `313 ns` claim outright and is a genuinely useful finding: `MmapFile`'s real advantage is avoiding the allocation/copy for large files or sparse access patterns (lower peak RSS, share pages across processes), not raw single-shot read latency at these sizes. No README claim is made from this row; it's recorded here for the record and to keep future readers from reintroducing the old number. **Reproduce:** ```bash cargo bench -p clawhdf5-bench --features libhdf5-compare --bench h5bench_meta -- metadata_open_from_disk cargo bench -p clawhdf5-bench --features libhdf5-compare --bench h5bench_meta -- metadata_parse_in_memory cargo bench -p clawhdf5-bench --features libhdf5-compare --bench h5bench_read -- read_zerocopy_mmap ``` ## Independent Validation: tank — LongMemEval & Vector Search (Ryzen 7 7800X3D), 2026-08-05 Re-running the "LongMemEval Results" and "SIMD & Parallelism" sections above on tank (AMD Ryzen 7 7800X3D, 8C/16T, Ubuntu 26.04, same machine as the vs-libhdf5 validation above) to give both sections the dated, hardware-cited, reproducible citation the top-of-file traceability note flags them as missing. ### LongMemEval Results (reproduction) ```bash cd benchmarks/longmemeval wget https://huggingface.co/datasets/xiaowu0162/longmemeval-cleaned/resolve/main/longmemeval_oracle.json cargo run --release --bin longmemeval_bench ``` Recall numbers are deterministic (pure BM25 retrieval over a fixed dataset) and reproduce exactly. Scoring target as declared in the LongMemEval section above: retrieval recall, turn-level, k=10, `longmemeval_oracle` variant, BM25-only. | Metric | Turn-Level | |--------|------------| | Hit@1 | 52.6% | | Hit@5 | **84.4%** | | Hit@10 | 90.4% | | MRR | 0.6597 | Session-level figures are omitted here — they are degenerate on the oracle variant and have been retracted; see "Retracted: session-level recall and the MemX comparison" above. Search latency (hardware-dependent, tank numbers): | Metric | avg | p50 | p95 | p99 | |--------|-----|-----|-----|-----| | Latency | 2,431 µs | 2,105 µs | 7,250 µs | 12,018 µs | Higher than the i7-12650H figures at the top of this file (avg 1,004 µs) despite tank's faster single-core performance elsewhere in this document — BM25 search latency here scales with per-question haystack size and this run's variance is wider (p99 is ~5x the mean), suggesting this metric is more sensitive to momentary scheduling/cache effects than the flat-array vector-search benchmarks. Recorded as-is rather than smoothed. ### SIMD & Parallelism (reproduction, with a correction) ```bash cargo bench -p clawhdf5-agent --bench bench -- "^(strategy_scalar_10k|strategy_simd_10k|strategy_rayon_10k|adaptive_search_10k|simd_cosine_100k|rayon_cosine_100k)$" ``` The original 10K table above compares named benchmarks (`vector_search`, `rayon`, `strategy`) that, on inspection, don't all exercise the same scalar-vs-SIMD-vs-parallel axis the table implies — several of the `simd_cosine_10k`/`sequential_cosine_10k`-style benchmarks actually call the same underlying function under different names. The `adaptive_benches` group's `strategy_scalar_10k` / `strategy_simd_10k` / `strategy_rayon_10k` benchmarks are the ones that genuinely hold the dataset fixed and vary only the `SearchStrategy` enum, so they're the correct apples-to-apples comparison — used here instead. | Strategy | Latency (tank) | vs Sequential | |----------|-----------------|----------------| | Sequential (scalar) | 502 µs | 1.0x | | SIMD (auto-vectorized) | 327 µs | **1.53x** | | Rayon (parallel) | 323 µs | **1.55x** | | Adaptive (auto-select) | 339 µs | **1.48x** | Honest finding: the speedup from SIMD/parallelism over scalar is real but smaller here (~1.5x) than the i7-12650H figures above (~2.0x). The Ryzen 7 7800X3D's large L3 cache (96MB 3D V-Cache) measurably narrows the gap versus a naive scalar loop compared to the i7 — this is a genuine hardware-dependent result, not a regression or measurement error, and is recorded rather than reconciled away. At 100K, no `strategy_*` benchmark exists in the current suite (`adaptive_benches` only covers n=10,000), so this row uses the same `simd_cosine_100k`/ `rayon_cosine_100k` benchmarks as the original table — not a true scalar baseline, so no "vs Sequential" multiple is reported for it: | Strategy | Latency (tank) | |----------|-----------------| | SIMD | 6.60 ms | | Rayon parallel | 4.73 ms | ### Vector Search Latency & Comparison to MemX (reproduction) ```bash cargo bench -p clawhdf5-agent --bench bench -- "^(vector_search_1k|simd_cosine_10k|simd_cosine_100k|prenorm_search_10k|ivf_search_10k_nprobe10|ivf_search_100k_nprobe10|ivf_pq_search_100k|rairs_search_10k_nprobe10|bm25_search_10k)$" ``` | Scale | Flat Search | Pre-norm | IVF (nprobe=10) | IVF-PQ | RAIRS | |-------|-------------|----------|-----------------|--------|-------| | **1K** | 47.8 µs | — | — | — | — | | **10K** | 501 µs | 322 µs | 24.8 µs | — | 109 µs | | **100K** | 6.60 ms | — | 608 µs | 865 µs | — | (The 1K Pre-norm cell from the original table has no corresponding benchmark in the current suite — not re-verified, left blank rather than guessed.) Same not-like-for-like caveat as the "Comparison to MemX" section at the top of this file applies — MemX's figure is end-to-end, these are a single component. Ratios are an order-of-magnitude indication, not a benchmark result. | Metric | MemX (claimed, end-to-end) | ClawhDF5 (tank, component only) | Ratio | |--------|----------------------------|----------------------------------|-------| | 100K flat search | <90 ms | 6.60 ms | ~14x | | 100K IVF-PQ search | — | 865 µs | ~104x | | Keyword search 10K | 1,100x improvement over unindexed | 520 µs (BM25) | Comparable | Every figure in this subsection is faster than the corresponding i7-12650H number at the top of this file, consistent with the Ryzen 7 7800X3D's higher single-core throughput and larger cache observed in the vs-libhdf5 validation above.