h5rs (dump, ls, diff, check --data) kept its own lenient VL decoder:
a heap object longer than its element was cut to the element's length
(libhdf5 and h5py refuse it), a null string printed "" where h5dump
prints NULL, the stored element size was trusted, and every heap
collection was kept as an owned copy for the whole run. It now resolves
each element with VlResolver::element / string_element (new: one element
in place, borrowing from the file), and refuses a VL type whose stored
element size is not 4 + offset size + 4, as File does. H5::heap_object
and its cache are gone. h5diff compares a null VL string equal to an
empty one; so does h5rs diff.
clawhdf5-wasm already resolved VL strings with read_vl_strings; it now
uses VlResolver and checks the stored element size before reading, as
File::read_string does.
Tests (h5py writes the files, patched for "a\0b", a null element and
mis-sized heap objects, with 8- and 4-byte offsets):
- h5rs_interop dump_prints_vl_data_like_h5dump: byte-identical to h5dump;
- dump_json_vl_values_match_h5py: h5py's values, errors where h5py fails;
- check_data_flags_mis_sized_vl_heap_objects;
- clawhdf5-wasm tests/vl_strings.rs: wasm, File and h5py agree.
All four fail before. check --data over the 150 cve_hdf5 CVE and fuzzer
files now passes 15 (h5dump rejects 8 of them), was 16 and 9: the
stored-size check flags cve-2024-32608. h5rs-check-ok-files.sh --data:
0 of 422 flagged; h5rs-fuzz.sh: clean on 180 files.
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
cargo test --workspace unifies clawhdf5-format/zstd on (another member
enables it), so the native interop test read the Zstd dataset that the
wasm build refuses. The fixture now records its values plus the error
the wasm build must give; the native test accepts either, the Node test
of the real wasm package still requires the error.
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
Drop a file (or pass ?file=<url>&path=<object>), browse the tree lazily,
see a dataset's type, shape, max shape and attributes, and page through
its values as 50x12 hyperslab windows (leading dims of 3-D+ data held
at chosen indices). build.sh produces pkg/ (not committed) with
wasm-bindgen --target web and checks the CLI matches the crate version.
test/run.sh builds it and runs test.mjs under Node against the h5py/
netCDF4 fixture (250 checks: every dataset whole and as a strided
hyperslab, listings, attributes, error paths, the page's DOM-free
helpers), then browser.sh renders the page in headless Chromium for
eight objects and checks the DOM. The fixture gains LZ4 (read) and Zstd
(refused: links C) datasets and a compound attribute (value null plus
its type). ci-test.sh runs it when node and wasm-bindgen exist; the CI
container has neither, so CI relies on the native h5py_interop test.
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
open(bytes) -> H5File with kind/list/info/attrs/attrErrors/read/
readHyperslab. Numeric data comes back in the typed array of the
stored width (Int16Array for i16, BigInt64Array for i64, Float32Array
for f32/f16, ...), strings and enum names as string arrays, array
datatypes flattened with their dims appended to the shape. Compound,
reference, opaque and VL-sequence datasets are refused with an error
naming the type; nothing is returned as reinterpreted bytes.
The logic is in a plain-Rust core module, tested natively: unit tests,
and h5py_interop, which compares every dataset, hyperslab, listing and
attribute of an h5py- and a netCDF4-written file with what libhdf5
reads back (generator shared with the Node test of the built package).
No mmap, no threads; lz4 is on, zstd/szip (C) are not. A
wasm-release profile (opt-level s, LTO) serves the browser build.
ci-test.sh lints the crate for wasm32 and checks it builds no C.
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
