Commit Graph
8 Commits
Author SHA1 Message Date
osobhandClaude Opus 5.5 aab7ea9e8f format: rustfmt the Storage conversions
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 12:49:05 -05:00
osobhandClaude Opus 5.5 cd828725c7 format: parse object headers over Storage
ObjectHeader::parse_in(&dyn Storage, u64, ..) reads the signature, the
prefix (a window of at most 34 bytes for version 2) and then each chunk,
continuation chunks included, as one bounded read; the message loops run
unchanged on the chunk with chunk-relative positions. parse keeps its
&[u8] signature as a wrapper. Bounds errors are reported as before, with
absolute positions and the file's length. New test: headers of both
versions, with times, phase-change values, creation order and a
continuation chunk, and every truncation of each, parse identically
through a read_at-only CountingStorage.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 12:46:51 -05:00
osobhandClaude Opus 5.5 1207df5189 feat(format): ObjectHeader::object_class, libhdf5's object classification
libhdf5 decides what an object header is in a fixed order
(H5O__obj_class_real): a group if it has a Symbol Table or Link Info
message, a dataset if it has a Datatype *and* a Dataspace message, a named
datatype if it has a Datatype message. The conformance probe called any
header with a Data Layout message a dataset, so cve-2024-33874's /Dset1 (a
datatype and a layout, no dataspace), which h5py opens as a named
datatype, was reported as a dataset we failed to read
(MissingMessage(Dataspace)). The probe now classifies with
object_class().

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 10:14:31 -05:00
osobhandClaude Opus 5.5 993214723e test: a v2 header message running into the checksum is refused, as in libhdf5
The review read libhdf5's H5O__chunk_deserialize as accepting a v2
message that runs up to 4 bytes into the chunk's checksum, since it
bounds message bodies by the whole chunk buffer. It does not accept it:
the message loop stops at the checksum, and the checksum read that
follows starts past it and overruns the chunk ("ran off end of input
buffer while decoding"). h5py refuses such files whether the message
runs 1, 4 or 5 bytes in, and so does clawhdf5, with its own error text.
No code change; the test pins the agreement and a comment records why.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 01:32:00 -05:00
osobhandClaude Opus 5.5 f4dee1cd08 fix(format): refuse object headers libhdf5 refuses to load
ObjectHeader::parse now checks each header message the way libhdf5's
H5O__chunk_deserialize does, and fails with InvalidObjectHeader (libhdf5's
own error text) instead of reading objects out of a corrupt header:

- v1: every message in chunk 0 is read (not just the prefix's count) and
  more messages than the prefix claims is "bad object header message
  count"; message sizes must be multiples of 8; leftover bytes are a gap,
  which only v2 allows; the prefix's chunk size must fit its count.
- v1 and v2: a message running past its chunk is an error (it used to end
  the chunk quietly, dropping it and everything after); contradictory
  message flags; a message of a class that cannot be shared flagged
  shared/shareable; a reference-count message in a v1 header; malformed
  continuation, reference-count and modification-time messages (libhdf5
  decodes these while loading the header).
- v2: unknown header status flags, max_compact < min_dense, a chunk 0
  smaller than a message header, a gap in a chunk that has NIL messages.

Conformance (cached corpus, tank): 569 -> 570 ok (h5stat_err_refcount.h5).
Objects libhdf5 refuses that clawhdf5 used to read: cve-2016-4332-mtime
(/dataset), cve-2016-4332-mtime-new, cve-2018-11204, cve-2018-13873,
cve-2024-32619, cve-2024-33873, cve-2024-33874, gh-4433-poc-08; seven more
CVE objects that already failed now fail with libhdf5's reason.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 00:02:49 -05:00
osobhandClaude Opus 5.5 57e938c438 fix(format): honour unknown-message flags the way libhdf5 does
The object header parser failed on an unknown message with flag bit 3
set and ignored bit 7. Per the spec, bit 3 means "fail if unknown and
the file is opened for writing" and bit 7 "fail if unknown, always".
The parser only reads, so it now ignores bit 3 (as libhdf5 does for a
read-only open) and refuses bit 7, in v1 headers, v2 headers and their
continuation chunks.

On libhdf5's conformance file tbogus.h5 (added as a fixture) we used to
refuse Dataset2 and open Dataset3; we now match libhdf5: Dataset1, 2, 4
and 5 open, Dataset3 is refused.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-25 21:14:30 -05:00
Omar Sobh 55959b4920 ci: wire up CI, fix no_std build, fix stale package names in scripts
CI / test (push) Failing after 15s
- Add .gitea/workflows/ci.yml running scripts/ci-test.sh (fmt, clippy,
  test, no_std check) on push/PR to main.
- Fix stale rustyhdf5-py/rustyhdf5-format package names in
  ci-test.sh/check-nostd.sh, which had been silently no-op'ing those
  checks (cargo warns but doesn't fail on an unknown --exclude/-p
  target).
- With those checks actually running, fix the real issues they surface:
  - clippy: useless_conversion in chunked_write.rs, byte_char_slices in
    global_heap.rs/object_header.rs.
  - cargo fmt: apply formatting across the workspace (whitespace only).
  - no_std (thumbv7em-none-eabihf) build errors in clawhdf5-format:
    core::sync::atomic::AtomicU64 doesn't exist on that target (no
    native 64-bit atomics) — switch profiling.rs's counters to
    portable-atomic, which falls back to a CAS-based emulation there
    and is a no-op wrapper elsewhere. Add missing alloc imports for
    Box (filters.rs), Vec (filters_szip.rs), and format! (dict_encoding.rs)
    on no_std paths. Replace f64::powi (std/libm-only) with a small
    local exponentiation-by-squaring helper in the scale-offset filter.
2026-08-05 10:50:13 -07:00
redclawsystems 3f222f6956 Merge pull request 'docs(clawhdf5): document DType variants, fix unresolved doc links' (#17) from sdlc-docs/clawhdf5-types-20260514-165210 into main 2026-05-14 23:54:48 +00:00