Commit Graph
7 Commits
Author SHA1 Message Date
osobhandClaude Opus 5.5 04a7f6f6c7 read: of two links with one name, the first wins everywhere
A valid group has one link per name, but a damaged or hand-made one can
have two. resolve_child followed the first soft link of the name, the
listing skipped a dangling one and listed the name via a later link, and
path resolution followed the last symbolic link: three answers. All now
take the first link of the name (header message order in a compact group,
name index order in a dense one) and ignore the rest, even if the first
dangles. That is libhdf5's rule for compact groups (H5G__compact_lookup
stops at the first Link message); h5py opens nothing for a dangling first
link although a later one resolves. For a dense group libhdf5
binary-searches the index and may land on another of several exact
duplicates; documented on first_link_named. find_symbolic_link's v2 branch
was dead (only v1 groups reach it) and is now v1-only.

Test: an h5py compact group with soft links dup_A (dangling, or to /d) and
dup_B (the other), dup_B renamed to dup_A in the header and re-checksummed.
Lookup, path and listing through all three readers match h5py for both
orders. With the old group_v2.rs the path lookup returned 42 where h5py
opens nothing.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 14:11:47 -05:00
osobhandClaude Opus 5.5 02e89c1d2d read: look names up through the dense name indexes
Finding one link or attribute by name read every entry: Group::dataset and
Group::group (File, MmapFile, LazyFile) listed the whole group per call, and
path resolution scanned each group's links. Opening every child of a
35 001-link group by name decoded ~1.2e9 links.

Now a dense group's v2 B-tree name index (type 5, lookup3 hash of the
name) is descended to the records with the name's hash
(btree_v2::find_btree_v2_records reads only the nodes whose key interval
overlaps), and only those links are read and compared; all hash-equal
records are compared, so libhdf5's tie order does not matter. Dense
attributes the same through their type 8 index
(attribute::find_attribute_in_file, facade attr(name)); huge heap objects
through their ID-ordered index. group_v2::resolve_child returns what the
listing has under a name (soft links followed, dangling/external ones not
found). Group::entries and File::group_at hand out a listing's addresses.

The lookup-stats feature counts heap objects read. Tests: one lookup in
an h5py-written 35 001-link group with colliding hashes reads at most two
links (before: 35 001, failing), attribute lookups likewise (before: 3 000,
failing), every child opens through all three readers and matches h5py,
every link kind resolves as h5py resolves it in dense and compact groups,
300 huge attributes are found, and a range search matches a full scan at
every tree depth.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 13:33:19 -05:00
osobhandClaude Opus 5.5 16b7359485 fix(format): a v1 group with an empty link name fails its listing
libhdf5 refuses to list a symbol-table group that has an entry with an
empty name (H5G__ent_to_link: "invalid link name"), so h5py cannot list
cve-2021-46244's /BAG_root. We listed it, with an object at "/BAG_root/"
(the empty name, pointing at address 0). resolve_v1_group_entries — the
listing — now fails with the new FormatError::InvalidLinkName; path
lookups still find the group's other names, as libhdf5's by-name lookup
does.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 10:15:50 -05:00
osobhandClaude Opus 5.5 aadfd18d4c fix(format): list soft links as their targets, like h5py
Group::datasets()/groups() (and the Mmap/Lazy handles) listed only hard
links, so a soft link to a dataset or group was missing, and dataset(name)
/ group(name) on a group handle could not open one. In old-style (symbol
table) groups a soft link's entry has no object header address, and the
listing failed outright trying to parse one.

The three facade handles each had their own copy of the child-listing
code; they now share group_v2::resolve_group_children, which returns hard
links plus soft links resolved to their targets (relative targets from
the group holding the link, via the new resolve_path_from). A dangling or
cyclic soft link, an external link and a user-defined link are left out —
h5py lists their names but cannot open them. Any other error met while
resolving is returned, not hidden.

Path resolution now walks a relative soft link's target from the group
holding it instead of rebuilding the path from the root (same result,
one less re-walk), and ignores "." components.

Regression test: soft_links_are_listed_as_their_targets (h5py writes
absolute, relative, group, dangling, cyclic and external links with
libver latest and earliest; listings compared with h5py for File,
MmapFile and LazyFile).

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-25 22:00:46 -05:00
osobhandClaude Opus 5.5 38d0d4de02 fix(format): skip user-defined links instead of failing the group
Link types 65-255 are user-defined: their target is only meaningful to
the application that registered the link class. LinkMessage::parse
rejects them with InvalidLinkType, and group traversal propagated that,
so one such link made the whole group unlistable and every path through
it unresolvable (libhdf5's tall.h5 and tudlink.h5, class 187).

Group traversal (compact and dense) now leaves user-defined links out,
the way h5py leaves out links it cannot open; reserved types (2-63) are
still an error.

Regression test: user_defined_links_do_not_break_the_listing, on
libhdf5's own tools/test/testfiles tall.h5 and tudlink.h5 (BSD-style
HDF5 licence, 10 KB and 1 KB), committed as fixtures.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-25 21:57:18 -05:00
osobhandClaude Fable 5.1 e38c8133bc feat(format): follow soft links; explicit errors for external links and external raw data
- Path resolution follows soft links in both old-style (symbol table, cache
  type 2) and new-style (compact and dense Link message) groups: absolute and
  relative targets, links to groups, links through links, with a depth limit
  so a link cycle is NestingDepthExceeded rather than a hang. A dangling link
  reports the target it could not find. Previously every soft link was
  PathNotFound.
- An external link is FormatError::ExternalLinkUnsupported { filename,
  object_path } instead of a misleading PathNotFound.
- Message 0x0007 (External Data Files) is now a known MessageType, and a
  dataset carrying it is FormatError::ExternalDataFilesUnsupported. Such a
  dataset has no data address in this file, so it would otherwise be read as
  "never written" and answered with fill values — wrong data, no error.
- Dense link iteration is shared between hard-link listing and the new
  symbolic-link lookup; entry listing behaviour is unchanged.
- h5py interop test for both libver settings.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
2026-09-19 06:39:01 -07:00
redclawsystems 3f222f6956 Merge pull request 'docs(clawhdf5): document DType variants, fix unresolved doc links' (#17) from sdlc-docs/clawhdf5-types-20260514-165210 into main 2026-05-14 23:54:48 +00:00