Commit Graph
6 Commits
Author SHA1 Message Date
osobhandClaude Opus 5 e9aeb110b7 fix(format): bound B-tree v2 traversal against crafted files
Traversal recursed one frame per level with the depth taken from the
file (a u16), and followed child addresses without asking whether they
were shared. Two crafted inputs, both reproduced before fixing:

- A node listing itself as its own child, under a header claiming 65 535
  levels, overflowed the stack and aborted the process — SIGABRT, not an
  error a caller can handle — from under 100 bytes.
- Levels whose children all point at one shared node below reached it
  fan-out^depth times: 29.5 million records in 8 s from ~5 KB, and one
  more level would exhaust memory.

Depth is now capped at 64, as the fractal heap already was; no real tree
approaches it, since even at the minimum fan-out of two that is over
2^64 records. And traversal stops once it has produced more records
than the file has bytes to hold them — a valid tree stores each record
once in its own bytes, so this bounds shared subtrees without trusting
the header's own `total_records`. Both inputs now fail in under a
millisecond.

Every B-tree v2 user goes through this collector: dense attributes, v2
groups, shared messages and chunk indexes. To show the budget never
refuses a real file, a new interop test has HDF5 2.0 write a depth-2
chunk index with 40 000 records and reads back all 160 000 values; it
fails when the budget is deliberately made too tight.

Also corrects `BM25Index::search`, which claimed to use Block-Max WAND.
It scores exhaustively, and pruning would not help the store:
`hybrid_search` needs every score because fusion normalises over them.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
2026-09-20 16:56:05 -07:00
osobhandClaude Opus 5 84a39ef3c5 feat(agent): optional keyword stemming, measured and left off by default
The keyword stage had no stemming, so "training" and "trains" were unrelated
terms. bm25::TokenFilter::Stemmed strips common English inflections (plurals,
-ing/-ed, with consonant un-doubling) from documents and queries alike;
BM25Index::build_with and HDF5Memory::set_token_filter select it, and the
index records which filter built it so a stale one is rebuilt rather than
mixed.

Measured over the full LongMemEval haystack (500 questions, real MiniLM
embeddings) rather than adopted on principle — and it is a trade, not a win:

  BM25 only         Hit@1 53.8%  Hit@5 75.0%  Hit@10 81.6%  MRR 0.6320
  BM25 stemmed      Hit@1 52.0%  Hit@5 77.8%  Hit@10 84.0%  MRR 0.6320
  Hybrid 0.4/0.6    Hit@1 51.6%  Hit@5 81.4%  Hit@10 87.8%  MRR 0.6430
  Hybrid stemmed    Hit@1 50.2%  Hit@5 81.4%  Hit@10 88.2%  MRR 0.6394

Conflation buys depth and costs the top rank: on BM25 alone MRR is unchanged
to four decimal places, the deeper gains exactly offsetting the rank-1 loss.
On the shipping hybrid configuration the vector stage already supplies most of
that recall, so the trade is narrower and slightly negative. Default stays
Plain; Stemmed is there for callers who want Hit@5/@10 over rank-1 precision.

The stemmer is deliberately conservative — it only strips inflections, and
only when the stem stays long enough to be meaningful, since an aggressive one
also conflates unrelated words. Tests pin both the pairs that must meet and
the pairs that must not.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
2026-09-19 18:20:19 -07:00
osobhandClaude Fable 5.1 390a2e3836 perf(agent): unranked BM25 scores and a top-k merge — same rankings, 4-5x faster
Fusion min-max normalises over every keyword match, so hybrid_search asked
BM25 for a ranked list of the whole corpus: a hash insert per posting, then a
sort of every match, then the merge sorted every candidate again to keep k.

- BM25Index::scores returns every match unsorted, accumulated in a dense array
  (contributions are strictly positive, so zero means untouched). search() is
  built on it with the bounded heap.
- merge_vector_keyword partitions out its top k (select_nth) and orders only
  those, with the same score-then-id order.
- Both hybrid paths use scores().

Rankings are identical (equivalence tests for both changes). p50 0.24 -> 0.07
ms (1K), 2.1 -> 0.49 ms (10K), 23 -> 4.65 ms (100K).

The harness gains --fusion-study, which measured the alternative — capping the
keyword pool — and found it changes the top-10 for most queries (overlap
0.83-0.92, different #1 for 10-35%) for only a 2x saving. Not adopted.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
2026-09-19 13:27:31 -07:00
osobhandClaude Fable 5.1 2bfbb7fb4b perf(agent): persistent incremental BM25 index; no store rewrite per query
hybrid_search rebuilt the BM25 index from scratch (re-tokenising every record)
and rewrote the whole .h5 file on every single query, so a query cost O(store
size) in both CPU and disk I/O. Steady-state p50 per the search harness:
5.5 -> 0.24 ms (1K), 49 -> 2.1 ms (10K), 884 -> 23 ms (100K).

- BM25Index is incremental: add_document / remove_document keep it exactly
  equivalent to a fresh build over the same live documents (property test: 60
  random op sequences compared against BM25Index::build after every step). IDF
  moves to query time since it depends on the live document count. Top-k uses
  a bounded heap, ties break by doc id (results were HashMap-ordered), and the
  "WAND" code that computed a bound and then discarded it is removed.
- HDF5Memory keeps one index for its lifetime, built lazily. Appends are
  picked up by ensure_bm25_fresh whatever path added them; delete and in-place
  update report themselves; compaction drops the index. A test drives every
  mutation and compares against a fresh build.
- A query no longer calls flush(). Activation boosts are marked dirty and
  persisted by the next checkpoint, including a best-effort one on drop so a
  search-only session keeps them (approved behaviour change). Activation
  weights are capped at 16.0; they previously grew without bound.

The archived mission branch's BM25 cache was reviewed and not used: it was
invalidated by every write, so interleaved save/search still rebuilt per
query, and it changed the default fusion weights.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
2026-09-19 07:51:21 -07:00
ClawHDF5 Coding Agent 934d053f92 perf(agent): replace BM25 WAND top-k re-sort with a min-heap
top_k_scores.sort_by(...) ran over the full k-sized buffer for every
matching document that beat the running threshold (twice in the full
branch), plus another full sort on first reaching k results —
O(m·k log k) for m matching documents. Replace the Vec<f32> buffer
with a BinaryHeap<Reverse<HeapScore>> min-heap of size k, giving
O(m log k). Existing wand_returns_same_results_as_exhaustive test
confirms results are unchanged.

INT-11
2026-08-17 00:29:44 +00:00
redclawsystems 3f222f6956 Merge pull request 'docs(clawhdf5): document DType variants, fix unresolved doc links' (#17) from sdlc-docs/clawhdf5-types-20260514-165210 into main 2026-05-14 23:54:48 +00:00