Commit Graph
3 Commits
Author SHA1 Message Date
osobhandClaude Opus 5.5 d0d5347cd9 feat: write complex numbers, incl. HDF5 2.0 native complex (class 11)
- Datatype::Complex serializes class 11 version 5 byte-identically to
  libhdf5 2.2.0; containers holding it are written as version 5.
- DatasetBuilder::with_complex_f32/f64_data (h5py's {r, i} compound,
  default) and with_native_complex_f32/f64_data (class 11, opt-in);
  make_(native_)complex_f32/f64_type for attributes.
- Dataset::read_complex_f64/f32 read either form.
- Python create_dataset accepts complex64/complex128 (compound form).
- Parsing unchanged: class 11 still surfaces as {r, i}.
- Tests vs h5py 3.16 / libhdf5 2.0.0 and h5dump 2.2.0; docs.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-28 21:25:03 -05:00
osobhandClaude Opus 5.5 2d4b211523 feat(py): h5py-style reads of only the selected elements, GIL released
ds[key] read the whole dataset and sliced it in numpy, and knew six
dtypes. Keys (ints, positive-step slices, Ellipsis, one increasing index
list, compound field names) now map onto hyperslab selections, and the
facade's read_selection bytes become the numpy buffer without a copy
(PyArray::from_vec viewed as the dtype). dtype mapping follows h5py for
all integer/IEEE float widths and byte orders, bool, enum, complex, fixed
and variable-length strings, vlen sequences, opaque, array types and
(nested, padded) compounds; anything it cannot describe exactly is a
TypeError. Attributes return what h5py returns; groups and files gain
the rest of the h5py mapping interface. Reads run under py.detach.

tests/test_read_vs_h5py.py compares >500 reads with h5py 3.16 on an
h5py-written file, checks errors match, that a damaged chunk outside the
selection is never touched, and 8 threads reading at once.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 08:19:48 -05:00
osobhandClaude Opus 5.5 006bf3b131 fix(py): one name, clawhdf5, for the Python distribution and module
pyproject.toml named the distribution rustyhdf5 while the extension
module is clawhdf5, and the package's tests imported rustyhdf5, so
pytest failed at collection. Distribution, module-name and tests now
agree; the module gains __version__. maturin develop + pytest: 28 pass.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-26 08:09:54 -05:00