Commit Graph
14 Commits
Author SHA1 Message Date
osobhandClaude Opus 5.5 fc7ae6549a build: declare Rust 1.92 as the MSRV and check it in CI
CI / test-arm64 (pull_request) Successful in 1m19s
CI / test (pull_request) Successful in 5m23s
rust-version = "1.92" in [workspace.package], inherited by every crate.
1.92 is the floor: wgpu (clawhdf5-gpu) requires it, and the whole
workspace, Python bindings included, checks cleanly on it. ci-test.sh
reads the version from Cargo.toml and checks the workspace on exactly
that toolchain, so the manifests and the README badge cannot drift from
what actually builds. The badge said 1.75, below edition 2024's own
floor.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
2026-09-23 11:05:26 -05:00
osobhandClaude Opus 5 4a5544da1d chore(release): v2.7.0
Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
2026-09-20 18:24:07 -07:00
osobhandClaude Opus 5 18dc35f7e5 chore(release): v2.6.0
Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
2026-09-20 06:01:31 -07:00
osobhandClaude Opus 5 7155409202 chore(release): v2.5.0
Bump all workspace crates, the node package and pyproject to 2.5.0, fold the
two unreleased sections together and add upgrade notes for the behaviour
changes.

Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
2026-09-19 18:22:56 -07:00
osobhandClaude Fable 5.1 4aa3c5a1ca chore(release): v2.4.0
Bump all workspace crates, the node package and pyproject to 2.4.0, finalize
the changelog and add upgrade notes for the search behaviour changes.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
2026-09-19 13:32:47 -07:00
osobhandClaude Fable 5.1 0876796432 chore(release): v2.3.0
Bump all workspace crates, the node package and pyproject to 2.3.0, finalize
the changelog and add upgrade notes for the behaviour changes.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
2026-09-19 07:19:11 -07:00
osobhandClaude Fable 5.1 2053b69f07 chore(release): v2.2.0, point repository URLs at git.redclaw.dev
Bump all workspace crates, the node package and pyproject to 2.2.0 and
finalize the changelog. The repository URL in every manifest pointed at a
GitHub location that does not resolve; use the real origin.

Co-Authored-By: Claude Fable 5.1 <[email protected]>
2026-09-18 20:58:29 -07:00
Omar Sobh b08df7b628 clawmates: phase work
Mission: 01a00c41-bac0-7eb3-a8c8-8b7044f3086d
Phase: 01a00c41-bac2-71e3-a58b-c473421200ee

Committed by the ClawMates delivery pipeline from the agents' working tree. Authored by agents, not by the named committer.
2026-08-16 20:44:28 +00:00
Omar Sobh 534331ffbe chore: Tier 4d — hoist tempfile/criterion/half/serde to workspace.dependencies
CI / test (push) Failing after 13s
Add [workspace.dependencies] to the root Cargo.toml for the four
duplicated-across-many-crates dependencies flagged by the earlier review:
tempfile (7 crates), criterion (6), half (4 — real version skew, clawhdf5-gpu
pinned 2.7 while others used bare 2), and serde (4). Update every consuming
crate to `dep = { workspace = true }`, preserving crate-local `optional =
true` where it already existed. half now resolves uniformly to 2.7.x
workspace-wide instead of two separate semver ranges.

Also fixed clawhdf5-filters/Cargo.toml's stale "rustyhdf5" description
while touching the file (same class of leftover rename as prior fixes).

Not touching rayon/byteorder/clap (no skew found, lower priority).
2026-08-05 13:12:17 -07:00
Omar SobhandClaude Sonnet 4.6 2ddb22897c perf: eliminate double compression and improve shuffle filter throughput
Four independent write-path improvements:

1. Cache compressed chunks between Pass 1 and Pass 2 (chunked_write.rs,
   file_writer.rs): the two-pass layout writer previously called
   build_chunked_data_at_ext() twice per chunked dataset — once in Pass 1
   to get blob sizes and once in Pass 2 with real addresses. Add
   PrecompressedChunks / precompress_chunks() / build_chunked_data_from_
   precompressed() to compress once in Pass 1, cache the result, and only
   rebuild the address-dependent index structures in Pass 2. Expected
   ~2× speedup for chunked+deflate writes (512×512 deflate: 3.33ms → ~1.7ms).

2. SIMD-vectorisable shuffle filter (filters.rs): replace the naïve O(N·S)
   nested loop with an unrolled u32-load path for 4-byte elements (f32) and
   a cache-blocked tile loop for all other sizes. LLVM auto-vectorises the
   4-byte path into SSE2/AVX2/NEON byte-deinterleave sequences.

3. Zstd benchmark variant (h5bench_write.rs): add write_2d_chunked_zstd
   group measuring Zstd level 3 vs deflate level 6 side-by-side. Also fix
   the existing write_2d_chunked benchmark — the clawhdf5 path was missing
   .with_deflate(6), making the comparison apples-to-oranges. Add arXiv-
   backed doc recommendation on DatasetBuilder::with_zstd().

4. Zero-copy HNSW save (hnsw.rs, clawhdf5-io/lib.rs): add
   FileWriter::write_bytes_owned(Vec<u8>) that takes ownership to avoid the
   full-file clone in write_all_bytes(&[u8]). HNSW::save_to_hdf5 uses it.

Co-Authored-By: Claude Sonnet 4.6 <[email protected]>
2026-06-30 22:36:40 +00:00
Omar SobhandClaude Sonnet 4.6 d6c4d4f111 feat: implement filter codecs, format write extensions, and MPI-IO VOL
All three SDD plans fully wired and committed to main:

Filter Codecs (FC):
- FC-1: Implement float E-scale in scaleoffset_decompress (value = minval +
  code * 2^E, negative exponents via cast to i32); add two round-trip tests.
- FC-2: filters_szip.rs — feature-gated SZIP decode via libaec FFI; SZIP
  dispatch arm added to decompress_chunk.
- FC-3: libaec-sys workspace crate with pkg-config probe and aec_buffer_decode
  FFI binding; added to workspace members.

Format Write Extensions (FWE):
- FWE-1: GroupBuilder::add_external_link() API; wired through FinishedGroup
  → GrpFlat → file_writer pass 1/2/3 (OH size, layout cursor, final write);
  external_link_write_roundtrip test.
- FWE-2: data_layout_write.rs — serialize_vds_mappings with length_size param
  and version 0/1 (external vs same-file) selection; declared as pub mod.
- FWE-3: with_virtual_sources empty-mapping guard (Important #9) — empty vec
  is silently ignored; vds_empty_mapping_list test updated to assert non-VDS
  layout results.

MPI-IO VOL Backend (MPI):
- MPI-1/2/3: mpi_vol.rs — MpiVol implementing VirtualObjectLayer; root-read
  + broadcast collective read; gather + root-write collective write; feature-
  gated mpi-io feature; wired into clawhdf5-io lib.rs.
- MPI-4: mpi_io_bench binary (h5bench-equivalent MPI-IO throughput bench).

mpi_vol.rs reviewer fixes:
- Doc-comment updated to accurately describe root-read+broadcast pattern
  (not MPI_File_read_at); MpiVol::expected_capabilities() associated fn
  added so tests can verify capabilities without a live MPI universe;
  rank_and_size_stub_values renamed to no_feature_error_contains_feature_name.

Workspace check: zero warnings, 20 test suites pass.

Co-Authored-By: Claude Sonnet 4.6 <[email protected]>
2026-06-30 11:41:41 +00:00
osobhandClaude Opus 4.8 f1762f82a7 docs: fix stale package names, counts, and CLI subcommands
Sweep of the docs after the v2.0.0 rename and recent changes:
- Per-crate READMEs (13 files): rename leftover rustyhdf5-*/edgehdf5-*
  package names and badges to clawhdf5-*, bump usage versions to 2.1.0.
- README: update stale test badge (417 -> 1500+), workspace stats
  (15 crates/72K -> 17 crates/84K), agent crate stats (20.7K/32 modules),
  and add the missing clawhdf5-napi and clawhdf5-bench crates to the tree.
- CLAUDE.md: correct the CLI subcommand list (inspect/dump/index/search ->
  the actual create/save/search/recall/stats/flush-wal/agents-md/export/snapshot).

No code changes. Verified there are zero todo!()/unimplemented!() macros and
no TODO/FIXME comments in the tree.

Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
2026-06-03 11:17:04 +00:00
osobhandClaude Opus 4.8 a16e9ab8cb chore: bump workspace to 2.1.0
Bumps [workspace.package] and all 17 crate package versions (and internal
path-dependency requirements) from 2.0.0 to 2.1.0 for a coordinated release.

Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
2026-06-03 10:36:17 +00:00
redclawsystems 3f222f6956 Merge pull request 'docs(clawhdf5): document DType variants, fix unresolved doc links' (#17) from sdlc-docs/clawhdf5-types-20260514-165210 into main 2026-05-14 23:54:48 +00:00