rust-version = "1.92" in [workspace.package], inherited by every crate.
1.92 is the floor: wgpu (clawhdf5-gpu) requires it, and the whole
workspace, Python bindings included, checks cleanly on it. ci-test.sh
reads the version from Cargo.toml and checks the workspace on exactly
that toolchain, so the manifests and the README badge cannot drift from
what actually builds. The badge said 1.75, below edition 2024's own
floor.
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
The core crates (clawhdf5, -agent, -format, -io, -filters, -ann, -accel,
-netcdf4, -cli) now build no C by default: deflate defaults to zlib-rs,
a pure-Rust port of zlib-ng, and zlib-ng becomes the opt-in
`fast-deflate`, which overrides zlib-rs wherever it is enabled. A default
build no longer needs cmake or a C compiler.
Measured on tank, both builds run alternately, three rounds, medians:
zlib-rs is within 6% of zlib-ng on every HDF5 read and write (512x512
deflate-6 chunked write 1.458 vs 1.484 ms; 64 MB compressed read 64.4
vs 65.2 ms), and compressed output is byte-identical. Details in
BENCHMARKS.md, "Deflate backend".
Getting there took two fixes the first measurement exposed:
- zlib-rs needs `std` to detect SIMD at runtime. flate2 enables it via
its default `runtime_detection`, which `default-features = false` had
switched off, leaving zlib-rs 3.5x slower on inflate. The `zlib-rs`
features now enable it.
- Both deflate paths streamed through flate2's 32 KiB read/write
wrappers. They now hand the codec the whole chunk in one call, into a
buffer sized up front (~5% on chunked writes). This also fixes a
silent short read: the streaming reader returned a truncated stream's
bytes without an error; a truncated chunk is now DecompressionError.
In clawhdf5-filters, output longer than the stated size is now an
error rather than silently cut off.
CI: ci-test.sh lints and tests the zlib-ng path, and fails if a
C-building crate (*-sys, cc, cmake) enters a core crate's default
dependency tree. The arm64 job no longer installs cmake.
Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
Bump all workspace crates, the node package and pyproject to 2.5.0, fold the
two unreleased sections together and add upgrade notes for the behaviour
changes.
Co-Authored-By: Claude Opus 5 (1M context) <[email protected]>
Bump all workspace crates, the node package and pyproject to 2.4.0, finalize
the changelog and add upgrade notes for the search behaviour changes.
Co-Authored-By: Claude Fable 5.1 <[email protected]>
Bump all workspace crates, the node package and pyproject to 2.3.0, finalize
the changelog and add upgrade notes for the behaviour changes.
Co-Authored-By: Claude Fable 5.1 <[email protected]>
Bump all workspace crates, the node package and pyproject to 2.2.0 and
finalize the changelog. The repository URL in every manifest pointed at a
GitHub location that does not resolve; use the real origin.
Co-Authored-By: Claude Fable 5.1 <[email protected]>
Add [workspace.dependencies] to the root Cargo.toml for the four
duplicated-across-many-crates dependencies flagged by the earlier review:
tempfile (7 crates), criterion (6), half (4 — real version skew, clawhdf5-gpu
pinned 2.7 while others used bare 2), and serde (4). Update every consuming
crate to `dep = { workspace = true }`, preserving crate-local `optional =
true` where it already existed. half now resolves uniformly to 2.7.x
workspace-wide instead of two separate semver ranges.
Also fixed clawhdf5-filters/Cargo.toml's stale "rustyhdf5" description
while touching the file (same class of leftover rename as prior fixes).
Not touching rayon/byteorder/clap (no skew found, lower priority).
decompress_chunk() already threaded chunk_size (the pipeline's declared
decompressed size) into the scale-offset/nbit/szip decoders to bound their
output, but not into deflate/lz4/zstd/pcodec, all four of which allocated
based on attacker-controlled input with no cap:
- lz4: read a raw u32 "orig_size" straight from the compressed payload's
first 4 bytes and passed it directly to lz4_flex::block::decompress with
no upper bound — a 4-byte attacker-controlled field could request ~4 GiB.
- deflate (non-macOS path): unbounded flate2 read_to_end into a fresh Vec.
- zstd: zstd::decode_all with no output cap (classic decompression-bomb
vector, ratios can exceed 1000:1).
- pcodec: simple_decompress with no cap.
All four now take the expected chunk size and reject output that exceeds it
(or a 256 MiB absolute ceiling when the size is unavailable), matching the
pattern the other three filters already used. Also fixes the same unbounded
read_to_end in clawhdf5-filters' fast_deflate streaming fallback (used when
no size hint is available).
Added tests for each codec plus one exercising the actually-exploited path
through the public decompress_chunk() entrypoint.
Co-Authored-By: Claude Sonnet 5 <[email protected]>
Sweep of the docs after the v2.0.0 rename and recent changes:
- Per-crate READMEs (13 files): rename leftover rustyhdf5-*/edgehdf5-*
package names and badges to clawhdf5-*, bump usage versions to 2.1.0.
- README: update stale test badge (417 -> 1500+), workspace stats
(15 crates/72K -> 17 crates/84K), agent crate stats (20.7K/32 modules),
and add the missing clawhdf5-napi and clawhdf5-bench crates to the tree.
- CLAUDE.md: correct the CLI subcommand list (inspect/dump/index/search ->
the actual create/save/search/recall/stats/flush-wal/agents-md/export/snapshot).
No code changes. Verified there are zero todo!()/unimplemented!() macros and
no TODO/FIXME comments in the tree.
Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
Bumps [workspace.package] and all 17 crate package versions (and internal
path-dependency requirements) from 2.0.0 to 2.1.0 for a coordinated release.
Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>
