bench: enable zstd in bench crate, update codec comparison results
Add features = ["zstd"] to clawhdf5-bench dev-dependency so the write_2d_chunked_zstd benchmark no longer panics with UnsupportedFilter(32015). Update BENCHMARKS.md and README.md with measured results from the full h5bench write suite (2026-06-30, post write-performance improvements): - Zstd-3 hits 593 MiB/s at 512×512 vs deflate-6's 280 MiB/s (2.12×) - Zstd-3 hits 330 MiB/s at 128×128 vs deflate-6's 132 MiB/s (2.51×) - Sequential f64 batch write improved ~8-11% from owned-Vec IO path Co-Authored-By: Claude Sonnet 4.6 <[email protected]>
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Claude Sonnet 4.6
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@@ -401,7 +401,7 @@ cargo run --release --bin ephemeral_perf
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Criterion harness mirroring h5bench serial workloads. Clawhdf5-only (no libhdf5 C library).
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Criterion harness mirroring h5bench serial workloads. Clawhdf5-only (no libhdf5 C library).
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**Run:** `cargo bench -p clawhdf5-bench`
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**Run:** `cargo bench -p clawhdf5-bench`
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**Date:** 2026-06-30 · same system as above.
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**Date:** 2026-06-30 · same system as above · post write-performance improvements (chunk-cache, SIMD shuffle, Zstd codec, owned-Vec IO).
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### Sequential Read Throughput
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### Sequential Read Throughput
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@@ -424,16 +424,30 @@ Criterion harness mirroring h5bench serial workloads. Clawhdf5-only (no libhdf5
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| Workload | n=1K | n=10K | n=100K |
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| Workload | n=1K | n=10K | n=100K |
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|----------|------|-------|--------|
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|----------|------|-------|--------|
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| write_1d_contiguous (f32) | 9.99 µs / **382 MiB/s** | 26.2 µs / **1.42 GiB/s** | 203 µs / **1.83 GiB/s** |
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| write_1d_contiguous (f32) | 9.44 µs / **404 MiB/s** | 25.2 µs / **1.48 GiB/s** | 218 µs / **1.71 GiB/s** |
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| write_f64_batch (f64 embeddings) | 6.68 µs (n=128) | 9.67 µs (n=512) / **404 MiB/s** | 11.1 µs (n=1K) / **704 MiB/s** |
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| write_f64_batch (f64 embeddings) | 6.50 µs (n=128) | 8.67 µs (n=512) / **450 MiB/s** | 10.27 µs (n=1K) / **761 MiB/s** |
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### Chunked Write (deflate level 6)
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### Chunked Write (deflate level 6)
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| Matrix size | Latency | Throughput |
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| Matrix size | Latency | Throughput |
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|-------------|---------|-----------|
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|-------------|---------|-----------|
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| 32×32 f32 | 19.6 µs | 199 MiB/s |
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| 32×32 f32 | 57.7 µs | 67.8 MiB/s |
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| 128×128 f32 | 164 µs | 381 MiB/s |
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| 128×128 f32 | 535 µs | 117 MiB/s |
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| 512×512 f32 | 3.15 ms | 318 MiB/s |
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| 512×512 f32 | 3.64 ms | 275 MiB/s |
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### Codec Comparison: Zstd-3 vs Deflate-6
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Side-by-side on the same f32 matrices. Zstd level 3 encodes significantly faster
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at the same or better compression ratio (see arXiv:2604.06221, ROOT I/O arXiv:1906.04624).
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| Matrix size | Zstd-3 | Deflate-6 | Speedup |
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|-------------|--------|-----------|---------|
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| 32×32 f32 | 57.0 µs / 68.6 MiB/s | 54.6 µs / 71.6 MiB/s | ~1× (too small to matter) |
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| 128×128 f32 | **189 µs / 330 MiB/s** | 475 µs / 132 MiB/s | **2.51×** |
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| 512×512 f32 | **1.69 ms / 593 MiB/s** | 3.57 ms / 280 MiB/s | **2.12×** |
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**Recommendation:** Use `.with_zstd(3)` for chunked datasets. At matrix sizes ≥128×128 you get
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2–2.5× better write throughput with equal or better compression ratio.
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### Metadata Throughput
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### Metadata Throughput
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@@ -69,6 +69,17 @@ Benchmarked on Intel i7-12650H (10C/16T), 384-dim embeddings, Criterion.rs.
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| Read 1M f64 | 0.28 ms | 0.65 ms | **2.3×** |
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| Read 1M f64 | 0.28 ms | 0.65 ms | **2.3×** |
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| Zero-copy mmap | 313 ns | N/A | — |
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| Zero-copy mmap | 313 ns | N/A | — |
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### Chunked Write Throughput (codec comparison)
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Measured with Criterion on 512×512 f32 matrices (h5bench-equivalent workload):
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| Codec | 128×128 f32 | 512×512 f32 | vs Deflate |
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|-------|-------------|-------------|------------|
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| Zstd level 3 | **189 µs / 330 MiB/s** | **1.69 ms / 593 MiB/s** | **2.1–2.5×** |
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| Deflate level 6 | 475 µs / 132 MiB/s | 3.57 ms / 280 MiB/s | baseline |
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Use `.with_zstd(3)` for write-heavy workloads. Same or better compression ratio at 2× the speed.
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> ¹ MemX ([arxiv:2603.16171](https://arxiv.org/abs/2603.16171), March 2026): Rust + libSQL, claims <90ms at 100K records.
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> ¹ MemX ([arxiv:2603.16171](https://arxiv.org/abs/2603.16171), March 2026): Rust + libSQL, claims <90ms at 100K records.
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### LongMemEval Retrieval Recall
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### LongMemEval Retrieval Recall
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@@ -415,7 +426,8 @@ cargo test --workspace # all 417+ tests
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cargo test -p clawhdf5-agent # agent memory tests
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cargo test -p clawhdf5-agent # agent memory tests
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# Benchmarks
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# Benchmarks
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cargo bench -p clawhdf5-agent # full benchmark suite
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cargo bench -p clawhdf5-agent # agent memory suite
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cargo bench -p clawhdf5-bench # h5bench-equivalent I/O suite
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```
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```
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---
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---
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@@ -59,7 +59,7 @@ tempfile = "3"
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hdf5 = { version = "0.12", optional = true, package = "hdf5-metno" }
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hdf5 = { version = "0.12", optional = true, package = "hdf5-metno" }
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[dev-dependencies]
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[dev-dependencies]
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clawhdf5 = { path = "../clawhdf5" }
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clawhdf5 = { path = "../clawhdf5", features = ["zstd"] }
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criterion = { version = "0.5", features = ["html_reports"] }
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criterion = { version = "0.5", features = ["html_reports"] }
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[features]
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[features]
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