format: read a contiguous selection's runs merged across small gaps
gather_storage merged only runs that touch, so a strided selection of a contiguous dataset over a Storage became one range (and one owned Vec) per element: a stride-2 read of 32M f32 through File::open_storage made 16,777,232 read_at calls, took 2.0 s and peaked at 2.09 GB. The selection is now walked twice. The first walk checks the runs and plans spans: runs in increasing order at most 4 KiB apart (GATHER_GAP_BYTES) are read as one span up to 8 MiB (GATHER_SPAN_BYTES; a longer run is split), so nothing is stored per run. The spans are fetched in RAW_BATCH_BYTES batches while the second walk copies each run out of its span. Same checks and errors as before. The same read is now 32 reads and 0.31 s (File::open: 0.08 s). contiguous_read_interop: every h5py-checked selection is also read through File::open_storage and must give libhdf5's bytes; a new test bounds the range reads of strided, blocked, column and point selections (stride 2: at most 1 data read; 563,200 before). Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>
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@@ -61,7 +61,10 @@
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`chunks x extent` bytes (`tests/raw_fetch_bounds.rs`). Chunks the
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file's chunk cache already holds are not fetched. A selection fetches
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only the chunks its bounding box overlaps; a contiguous selection only
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its runs (adjacent ones merged). A global-heap collection is read once
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its runs, merged into reads of up to 8 MiB across gaps of up to 4 KiB
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(a stride-2 selection of 32M `f32` is 32 reads and 0.3 s over a
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`CountingStorage`, where one read per element was 16.8M reads, 2.0 s
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and 2.1 GB peak). A global-heap collection is read once
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per resolver and kept (within the resolver's 32 MiB budget).
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- Each extent's bounds error is the one the slice readers gave, reported
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when the read reaches that extent, so a damaged file fails with the
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