docs: first conformance report and baseline (42b81d9, tank)

467 of 697 files read identically to h5py 3.16 / HDF5 2.0, 123 our-error,
15 mismatch (2 an h5py big-endian VL bug), 92 libhdf5 cannot read; no
panics, hangs, crashes or OOM.

Co-Authored-By: Claude Opus 5.5 (1M context) <[email protected]>

CHANGELOG.md

@@ -197,6 +197,23 @@
   takes `--f32`; it had kept printing "f32" after the default changed.
 
 ### Interop
+- **Conformance sweep in the repo** (`conformance/`, report in
+  `CONFORMANCE.md`). `conformance/run.sh` fetches eight public HDF5 corpora
+  pinned by commit (libhdf5's test files, the HDF Group's CVE reproducers,
+  pyfive, netcdf-c, netcdf4-python, h5wasm, h5py, xarray-data) into a
+  gitignored cache, reads every file with clawhdf5 and with h5py/libhdf5 (and
+  the CVE files with h5dump) under a timeout and memory limit, compares them
+  object by object and regenerates the report — about 30 s once the corpus is
+  cached. A nightly Gitea job (`.gitea/workflows/conformance.yml`) runs it and
+  fails on any panic, hang, crash or out-of-memory, or when a file in
+  `conformance/baseline.json` stops reading identically. First report, on
+  42b81d9: 467 of 697 files identical to h5py, 123 our-error, 15 mismatch
+  (2 of them an h5py bug), 92 that libhdf5 cannot read, no panics, hangs or
+  crashes. Compared with the ad-hoc audit sweep, the probe now compares
+  N-Bit floats (and integers with a bit offset) as the values libhdf5
+  converts them to rather than raw file bytes — 8 files that were reported as
+  mismatches read identically — and the reference side no longer flips
+  between runs when libhdf5 aborts while freeing h5py objects.
 - `clawhdf5-format`: **every `f32` dataset was unreadable by h5py and
   libhdf5.** The float datatype encoder hard-coded the sign bit's position to
   63, correct only for `f64`; libhdf5 validates it and refused the dataset. It

CONFORMANCE.md

@@ -0,0 +1,302 @@
+# clawhdf5 conformance report
+
+Every HDF5 file of eight public corpora (pinned by commit) is read twice — by
+clawhdf5 (`conformance/probe`, the same `clawhdf5-format` calls the facade
+makes) and by h5py/libhdf5 (`conformance/ref.py`) — and the two readings are
+compared object by object: the set of hard-linked objects, each dataset's and
+attribute's shape, and a SHA-256 of its values in a canonical encoding. The
+CVE corpus is also run through `h5dump`. Each side runs under a timeout and an
+address-space limit, so a hang, crash or runaway allocation is recorded, not
+fatal. This file is generated by `conformance/run.sh`; do not edit it by hand.
+
+## Run
+
+| | |
+|---|---|
+| date | 2026-09-26 03:05 UTC |
+| clawhdf5 commit | `42b81d9f1c3d9bef6050ad8a1326ac8c97f641d3` |
+| machine | `tank`: AMD Ryzen 7 7800X3D 8-Core Processor, 16 CPUs, 61 GiB, Linux 7.0.0-34-generic x86_64 |
+| command | `conformance/run.sh --update-baseline` |
+| rustc | rustc 1.98.1 (48a229cea 2026-09-01) |
+| reference | h5py 3.16.0, HDF5 2.0.0, numpy 2.5.3, hdf5plugin 7.1.0, Python 3.14.4 |
+| h5dump | Version 1.14.6 (CVE corpus only) |
+| limits | 20 s timeout (SIGKILL), 4096 MiB address space, per process; 16 files in parallel |
+| runtime | 25 s probing + comparing (0 s fetch/build before it) |
+
+## Results
+
+A file's class is the first that applies:
+
+- **panic / hang / crash / oom** — clawhdf5 panicked (caught per object or not), hit the timeout, died on a signal, or failed an allocation. The CI gate fails on any of these.
+- **h5py-cannot-read** — libhdf5 could not open the file (or itself crashed or hung). Nothing to compare against; most are the deliberately malformed CVE reproducers.
+- **our-error** — clawhdf5 returned an error for something h5py reads.
+- **mismatch** — both read it, but the shapes, values, object set or attribute set differ.
+- **ok** — every object h5py reads, clawhdf5 reads identically.
+
+| corpus | files | ok | our-error | mismatch | h5py-cannot-read | panic | hang | crash | oom |
+|---|---|---|---|---|---|---|---|---|---|
+| NCAS-CMS_pyfive | 33 | 31 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
+| cve_hdf5 | 147 | 87 | 17 | 11 | 32 | 0 | 0 | 0 | 0 |
+| h5py_data | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
+| hdf5 | 466 | 300 | 103 | 3 | 60 | 0 | 0 | 0 | 0 |
+| netcdf-c | 20 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
+| netcdf4-python | 18 | 16 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
+| usnistgov_h5wasm | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
+| xarray-data | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
+| **all** | **697** | **467** | **123** | **15** | **92** | **0** | **0** | **0** | **0** |
+
+2 of the 15 mismatches are a known h5py bug, not ours (see *Known not-our-bug*).
+
+Corpora (fetched by `conformance/fetch-corpus.sh` into the gitignored `conformance/.cache/`):
+
+| corpus | source | commit |
+|---|---|---|
+| hdf5 | https://github.com/HDFGroup/hdf5 | `a3cf1ea82cc7` |
+| cve_hdf5 | https://github.com/HDFGroup/cve_hdf5 | `3fd1f5ae3869` |
+| netcdf-c | https://github.com/Unidata/netcdf-c | `beb7b9585273` |
+| NCAS-CMS_pyfive | https://github.com/NCAS-CMS/pyfive | `8cf07b874913` |
+| usnistgov_h5wasm | https://github.com/usnistgov/h5wasm | `02f6336527d2` |
+| netcdf4-python | https://github.com/Unidata/netcdf4-python | `6e67576d39ae` |
+| xarray-data | https://github.com/pydata/xarray-data | `a35297e9da2c` |
+| h5py_data | https://github.com/h5py/h5py (`h5py/tests/data_files`) | `b2f0347c4200` |
+
+## Panics, hangs, crashes, out-of-memory
+
+None.
+
+## Our-error root causes
+
+Grouped by normalised error message. *files* counts files whose class this cause affects.
+
+| files | objects | error | examples |
+|---:|---:|---|---|
+| 84 | 205 | `InvalidLayoutVersion(N)` | `cve_hdf5/cvefiles/cve-2016-4330.h5`, `cve_hdf5/cvefiles/cve-2016-4333.h5`, `cve_hdf5/cvefiles/cve-2018-11206-old.h5` (+81 more) |
+| 10 | 10 | `ChunkedReadError("…")` | `cve_hdf5/cvefiles/cve-2025-2308.h5`, `hdf5/test/testfiles/bad_nbit_parms_walk.h5`, `hdf5/tools/test/testfiles/vds/1_vds.h5` (+7 more) |
+| 9 | 17 | `InvalidObjectHeaderVersion(N)` | `cve_hdf5/cvefiles/cve-2021-36977.h5`, `cve_hdf5/cvefiles/unknown-1.h5`, `hdf5/tools/test/testfiles/h5clear_fsm_persist_user_equal.h5` (+6 more) |
+| 6 | 6 | `UnsupportedFilter(N)` | `hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_blosc.h5`, `hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_blosc2.h5`, `hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_bshuf.h5` (+3 more) |
+| 6 | 6 | `InvalidLinkType(N)` | `hdf5/tools/test/testfiles/bigendian/tall.h5`, `hdf5/tools/test/testfiles/h5diff_types.h5`, `hdf5/tools/test/testfiles/tall.h5` (+3 more) |
+| 5 | 5 | `UnexpectedEof { expected: N, available: N }` | `NCAS-CMS_pyfive/tests/data/cmip_bad_eg.nc`, `cve_hdf5/cvefiles/cve-2019-9151.h5`, `hdf5/tools/test/testfiles/h5stat_newgrat.h5` (+2 more) |
+| 3 | 3 | `DataSizeMismatch { expected: N, actual: N }` | `cve_hdf5/cvefiles/cve-2020-18494.h5`, `cve_hdf5/cvefiles/cve-2024-32623.h5`, `cve_hdf5/cvefiles/cve-2025-2309.h5` |
+| 1 | 1 | `MissingMessage(Dataspace)` | `cve_hdf5/cvefiles/cve-2024-33874.h5` |
+| 1 | 2 | `InvalidSharedMessageVersion(N)` | `hdf5/tools/test/testfiles/h5stat_tsohm.h5` |
+
+## Mismatch root causes
+
+| files | objects | cause | examples |
+|---:|---:|---|---|
+| 9 | 27 | `missing-object` | `cve_hdf5/cvefiles/cve-2019-8397.h5`, `cve_hdf5/cvefiles/cve-2019-8398.h5`, `cve_hdf5/cvefiles/cve-2021-46243.h5` (+6 more) |
+| 5 | 11 | `extra-object` | `cve_hdf5/cvefiles/cve-2021-46244.h5`, `cve_hdf5/cvefiles/cve-2024-32613.h5`, `cve_hdf5/cvefiles/cve-2024-32616.h5` (+2 more) |
+| 3 | 7 | `extra-attr` | `cve_hdf5/cvefiles/cve-2018-17438`, `cve_hdf5/cvefiles/cve-2018-17439`, `cve_hdf5/cvefiles/cve-2024-33874.h5` |
+| 2 | 4 | `missing-attr` | `hdf5/tools/test/testfiles/twithub.h5`, `hdf5/tools/test/testfiles/twithub513.h5` |
+| 1 | 1 | `attr-values: ours=vlen(>u8) h5py=object layout=- filters=-` | `NCAS-CMS_pyfive/tests/data/attr_datatypes.hdf5` |
+| 1 | 1 | `values: ours=<f4 h5py=float32 layout=chunked filters=-` | `cve_hdf5/cvefiles/cve-2025-44904.h5` |
+| 1 | 1 | `values: ours=>i2 h5py=>i2 layout=chunked filters=[6]` | `cve_hdf5/cvefiles/cve-2025-44905.h5` |
+| 1 | 1 | `values: ours=>f4 h5py=>f4 layout=chunked filters=[2]` | `cve_hdf5/cvefiles/cve-2025-44905.h5` |
+| 1 | 1 | `values: ours=<f4 h5py=float32 layout=chunked filters=[2]` | `cve_hdf5/cvefiles/cve-2025-44905.h5` |
+| 1 | 1 | `values: ours=vlen({r:>f4,i:>f4}8) h5py=object layout=contiguous filters=-` | `hdf5/tools/test/testfiles/tcomplex_be.h5` |
+
+## CVE corpus: clawhdf5 vs h5dump vs h5py
+
+The 147 files of [HDFGroup/cve_hdf5](https://github.com/HDFGroup/cve_hdf5) — reproducers for
+published libhdf5 CVEs and fuzzer finds. *read* = produced output (possibly with per-object
+errors), *error* = refused cleanly. h5dump exits non-zero on any error anywhere in a file, so
+its read/error split is not comparable with the other two rows; the panic, crash, hang and oom
+columns are.
+
+| tool | read | error | panic | crash | hang | oom |
+|---|---:|---:|---:|---:|---:|---:|
+| clawhdf5 | 142 | 5 | 0 | 0 | 0 | 0 |
+| h5dump 1.14.6 | 16 | 129 | 0 | 2 | 0 | 0 |
+| h5py 3.16.0 / HDF5 2.0.0 | 115 | 31 | 0 | 1 | 0 | 0 |
+
+<details><summary>Per-file outcomes</summary>
+
+| file | h5dump | h5py | clawhdf5 | class |
+|---|---|---|---|---|
+| cvefiles/cve-2016-4330.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2016-4331.h5 | error exit | read 25 obj, 1 errors | read 25 obj, 1 errors | ok |
+| cvefiles/cve-2016-4332-mtime-new.h5 | error exit | read 25 obj, 1 errors | read 25 obj | ok |
+| cvefiles/cve-2016-4332-mtime.h5 | error exit | read 4 obj, 3 errors | read 4 obj, 1 errors | ok |
+| cvefiles/cve-2016-4332-stab.h5 | error exit | open error | read 65 obj | h5py-cannot-read |
+| cvefiles/cve-2016-4333.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2017-17505.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2017-17506.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2017-17507.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2017-17508.h5 | error exit | read 2 obj, 1 errors | read 2 obj | ok |
+| cvefiles/cve-2017-17509.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2018-11202.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2018-11203.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2018-11204.h5 | error exit | read 2 obj, 1 errors | read 2 obj | ok |
+| cvefiles/cve-2018-11205.h5 | error exit | read 2 obj, 1 errors | read 2 obj | ok |
+| cvefiles/cve-2018-11206-new.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2018-11206-old.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2018-11207.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2018-13866.h5 | error exit | open error | open error | h5py-cannot-read |
+| cvefiles/cve-2018-13867.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2018-13868.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2018-13869.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2018-13870.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2018-13871.h5 | error exit | read 2 obj | read 2 obj | ok |
+| cvefiles/cve-2018-13872.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2018-13873.h5 | error exit | read 1 obj, 1 errors | read 1 obj | ok |
+| cvefiles/cve-2018-13874.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2018-13875.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2018-13876.h5 | error exit | open error | read 2 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2018-14031.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2018-14033.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2018-14034.h5 | error exit | read 1 obj, 2 errors | read 1 obj | ok |
+| cvefiles/cve-2018-14035.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2018-14460.h5 | error exit | read 3 obj, 2 errors | read 3 obj, 2 errors | ok |
+| cvefiles/cve-2018-15671.h5 | ok | read 1 obj | read 1 obj | ok |
+| cvefiles/cve-2018-15672.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2018-16438.h5 | error exit | read 1 obj, 1 errors | read 1 obj | ok |
+| cvefiles/cve-2018-17233.h5 | error exit | read 6 obj, 1 errors | read 6 obj, 1 errors | ok |
+| cvefiles/cve-2018-17234.h5 | error exit | read 6 obj, 1 errors | read 6 obj, 1 errors | ok |
+| cvefiles/cve-2018-17237.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2018-17432.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2018-17433 | error exit | open error | open error | h5py-cannot-read |
+| cvefiles/cve-2018-17434.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2018-17435.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2018-17436 | error exit | open error | open error | h5py-cannot-read |
+| cvefiles/cve-2018-17437.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2018-17438 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | mismatch |
+| cvefiles/cve-2018-17439 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | mismatch |
+| cvefiles/cve-2019-8396.h5 | error exit | read 3 obj, 2 errors | read 3 obj, 2 errors | ok |
+| cvefiles/cve-2019-8397.h5 | error exit | read 3 obj, 2 errors | read 2 obj, 1 errors | mismatch |
+| cvefiles/cve-2019-8398.h5 | error exit | read 3 obj, 2 errors | read 2 obj, 1 errors | mismatch |
+| cvefiles/cve-2019-9151.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2019-9152.h5 | error exit | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2020-10809 | error exit | open error | open error | h5py-cannot-read |
+| cvefiles/cve-2020-10810.h5 | error exit | open error | read 2 obj | h5py-cannot-read |
+| cvefiles/cve-2020-10811.h5 | error exit | read 25 obj, 1 errors | read 25 obj, 1 errors | ok |
+| cvefiles/cve-2020-10812.h5 | error exit | open error | read 2 obj | h5py-cannot-read |
+| cvefiles/cve-2020-18232.h5 | error exit | read 3 obj, 2 errors | read 3 obj, 2 errors | ok |
+| cvefiles/cve-2020-18494.h5 | ok | read 2 obj | read 2 obj, 1 errors | our-error |
+| cvefiles/cve-2021-36977.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | our-error |
+| cvefiles/cve-2021-37501.h5 | error exit | read 18 obj, 1 errors | read 18 obj, 1 errors | ok |
+| cvefiles/cve-2021-45829.h5 | error exit | read 1 obj, 2 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2021-45830.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2021-45833.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2021-46242.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2021-46243.h5 | error exit | read 3 obj, 2 errors | read 2 obj, 1 errors | mismatch |
+| cvefiles/cve-2021-46244.h5 | error exit | read 2 obj, 1 errors | read 6 obj, 3 errors | mismatch |
+| cvefiles/cve-2024-29157.h5 | error exit | read 4 obj, 7 errors | read 4 obj, 7 errors | ok |
+| cvefiles/cve-2024-29158.h5 | ok | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2024-29159.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2024-29160.h5 | error exit | read 4 obj, 1 errors | read 4 obj, 1 errors | ok |
+| cvefiles/cve-2024-29161.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 2 errors | ok |
+| cvefiles/cve-2024-29162.h5 | error exit | read 17 obj, 4 errors | read 17 obj, 3 errors | ok |
+| cvefiles/cve-2024-29163.h5 | error exit | read 7 obj, 1 errors | read 7 obj, 1 errors | ok |
+| cvefiles/cve-2024-29164.h5 | ok | read 3 obj | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2024-29165.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2024-29166.h5 | error exit | read 17 obj, 2 errors | read 17 obj | ok |
+| cvefiles/cve-2024-32605.h5 | ok | read 6 obj, 1 errors | read 6 obj, 1 errors | ok |
+| cvefiles/cve-2024-32606.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2024-32607-1.h5 | ok | read 10 obj | read 10 obj | ok |
+| cvefiles/cve-2024-32607-2.h5 | error exit | read 9 obj, 1 errors | read 9 obj, 1 errors | ok |
+| cvefiles/cve-2024-32608.h5 | error exit | read 6 obj, 1 errors | read 6 obj | ok |
+| cvefiles/cve-2024-32609.h5 | error exit | SIGSEGV | read 4 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2024-32610.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/cve-2024-32611.h5 | ok | read 6 obj | read 6 obj | ok |
+| cvefiles/cve-2024-32612.h5 | ok | read 3 obj | read 3 obj, 2 errors | our-error |
+| cvefiles/cve-2024-32613.h5 | error exit | read 7 obj, 1 errors | read 11 obj | mismatch |
+| cvefiles/cve-2024-32614.h5 | error exit | read 25 obj, 2 errors | read 25 obj, 1 errors | ok |
+| cvefiles/cve-2024-32615.h5 | error exit | read 4 obj, 1 errors | read 4 obj, 1 errors | ok |
+| cvefiles/cve-2024-32616.h5 | error exit | read 10 obj, 7 errors | read 11 obj, 6 errors | mismatch |
+| cvefiles/cve-2024-32617.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2024-32618.h5 | error exit | read 4 obj, 2 errors | read 3 obj | mismatch |
+| cvefiles/cve-2024-32619.h5 | error exit | read 3 obj, 2 errors | read 3 obj | ok |
+| cvefiles/cve-2024-32620.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2024-32621.h5 | ok | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2024-32622.h5 | ok | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2024-32623.h5 | ok | read 6 obj | read 6 obj, 1 errors | our-error |
+| cvefiles/cve-2024-32624.h5 | error exit | read 6 obj, 1 errors | read 6 obj | ok |
+| cvefiles/cve-2024-33873.h5 | error exit | read 4 obj, 1 errors | read 4 obj | ok |
+| cvefiles/cve-2024-33874.h5 | ok | read 6 obj, 1 errors | read 6 obj, 1 errors | our-error |
+| cvefiles/cve-2024-33875.h5 | ok | read 2 obj | read 2 obj | ok |
+| cvefiles/cve-2024-33876.h5 | ok | read 3 obj, 1 errors | read 3 obj, 1 errors | ok |
+| cvefiles/cve-2024-33877.h5 | error exit | read 8 obj, 1 errors | read 8 obj, 1 errors | ok |
+| cvefiles/cve-2025-2153.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-2308.h5 | error exit | read 25 obj, 1 errors | read 25 obj, 2 errors | our-error |
+| cvefiles/cve-2025-2309.h5 | ok | read 6 obj, 1 errors | read 6 obj, 1 errors | our-error |
+| cvefiles/cve-2025-2310.h5 | error exit | read 24 obj, 8 errors | read 24 obj, 8 errors | ok |
+| cvefiles/cve-2025-2912.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-2913.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-2914.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-2915.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-2923.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-2924.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-2925.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-2926.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-44904.h5 | error exit | read 25 obj, 1 errors | read 25 obj, 1 errors | mismatch |
+| cvefiles/cve-2025-44905.h5 | error exit | read 25 obj, 3 errors | read 25 obj, 3 errors | mismatch |
+| cvefiles/cve-2025-6269-1.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-6269-2.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-6269-3.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-6269-4.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-6270-1.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-6270-2.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-6270-3.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-6516.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-6750.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-6816.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-6817.h5 | error exit | open error | read 1 obj | h5py-cannot-read |
+| cvefiles/cve-2025-6818.h5 | error exit | open error | read 1 obj | h5py-cannot-read |
+| cvefiles/cve-2025-6856.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-6857.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-6858.h5 | SIGSEGV | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-7067.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2025-7068.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2025-7069.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| cvefiles/cve-2026-26200.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| cvefiles/cve-2026-34734.h5 | error exit | read 2 obj, 1 errors | read 2 obj | ok |
+| cvefiles/cve-2026-92627.h5 | error exit | read 2 obj, 1 errors | read 2 obj, 1 errors | ok |
+| cvefiles/unknown-1.h5 | error exit | read 11 obj, 1 errors | read 11 obj, 5 errors | our-error |
+| fuzzerfiles/gh-4431-poc-03.h5 | error exit | read 1 obj | read 1 obj | ok |
+| fuzzerfiles/gh-4432-poc-05.h5 | SIGSEGV | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| fuzzerfiles/gh-4433-poc-08.h5 | error exit | read 1 obj, 1 errors | read 1 obj | ok |
+| fuzzerfiles/gh-4434-poc-09.h5 | error exit | open error | read 1 obj, 1 errors | h5py-cannot-read |
+| fuzzerfiles/gh-4435-poc-10.h5 | error exit | read 1 obj, 1 errors | read 1 obj, 1 errors | ok |
+| fuzzerfiles/gh-4585.h5 | error exit | open error | open error | h5py-cannot-read |
+| fuzzerfiles/gh_2649_flawed.h5 | error exit | read 9 obj, 1 errors | read 9 obj, 1 errors | ok |
+| fuzzerfiles/gh_2649_plain_model.h5 | ok | read 10 obj | read 10 obj | ok |
+
+</details>
+
+## Known not-our-bug
+
+- **h5py big-endian variable-length sequences.** h5py returns the elements of a VL sequence
+  whose base type is big-endian with the file's big-endian bytes but a native (little-endian)
+  numpy dtype, so the values it reports are byte-swapped garbage; `h5dump` prints the values
+  clawhdf5 reads. Reproducer: `h5py.vlen_dtype(np.dtype('>f4'))` dataset holding `[1.0, 2.0]`
+  reads back in h5py as `[4.6e-41, 9.0e-44]`. Affected here: `NCAS-CMS_pyfive/tests/data/attr_datatypes.hdf5`, `hdf5/tools/test/testfiles/tcomplex_be.h5`.
+- **Non-IEEE floats and partial-precision integers (N-Bit).** libhdf5 converts a float whose
+  bit layout is not IEEE (e.g. `H5Tset_precision` for the N-Bit filter) or an integer with a
+  bit offset / reduced precision into the plain numpy type of the same size. The probe
+  compares such values as converted numbers, not raw file bytes (before 2026-09-25 it compared
+  raw bytes, which reported every N-Bit float dataset as a mismatch).
+- **Types h5py widens.** Where h5py reads a type into a numpy type of a different size
+  (FP8 -> float16, bfloat16 -> float32, x87 long double -> float128) the values are not
+  compared (shape and presence still are): dataset file type size 1 -> numpy float16 (2) (15x), attr file type size 1 -> numpy float16 (2) (15x), dataset file type size 2 -> numpy float32 (4) (2x), dataset file type size 8 -> numpy float128 (16) (1x), dataset file type size 12 -> numpy float128 (16) (1x), attr file type size 2 -> numpy float32 (4) (1x), dataset file type size 2 -> numpy >f4 (4) (1x), attr file type size 2 -> numpy >f4 (4) (1x).
+- **References** are compared by presence only (`R`), not by target.
+
+## Objects h5py fails on but clawhdf5 reads
+
+- 19 x `OSError: Can't synchronously read data (no appropriate function for conversion path)`
+- 17 x `KeyError: '…'`
+- 1 x `TypeError: unhandled dtype kind M (dtype('…'))`
+- 1 x `OSError: Can't synchronously read data (bad coordinate offset)`
+- 1 x `KeyError: "…"`
+- 1 x `ValueError: Insufficient precision in available types to represent (N, N, N, N, N)`
+
+## Reproduce
+
+```sh
+# needs: Rust, python3 with h5py numpy hdf5plugin (conformance/requirements.txt), h5dump (hdf5-tools), git
+CLAWHDF5_PYTHON=/path/to/venv/bin/python conformance/run.sh
+```
+
+The corpus (about 450 MB of sparse checkouts) is cached in `conformance/.cache/`; results for
+every file, both sides' raw JSON and stderr, are in `conformance/.cache/results/`.
+`conformance/baseline.json` holds the ok files the nightly CI job (`.gitea/workflows/conformance.yml`)
+must keep; `conformance/run.sh --update-baseline` rewrites it.

conformance/baseline.json

@@ -0,0 +1,518 @@
+{
+ "comment": "conformance/run.sh fails if the ok count drops below `ok` or a file in `ok_files` stops being ok. Regenerate with `conformance/run.sh --update-baseline` after an intended change.",
+ "commit": "42b81d9f1c3d9bef6050ad8a1326ac8c97f641d3",
+ "date": "2026-09-26 03:05 UTC",
+ "reference": "h5py 3.16.0 / HDF5 2.0.0",
+ "files": 697,
+ "ok": 467,
+ "counts": {
+  "h5py-cannot-read": 92,
+  "mismatch": 15,
+  "ok": 467,
+  "our-error": 123
+ },
+ "per_corpus": {
+  "NCAS-CMS_pyfive": {
+   "mismatch": 1,
+   "ok": 31,
+   "our-error": 1
+  },
+  "cve_hdf5": {
+   "h5py-cannot-read": 32,
+   "mismatch": 11,
+   "ok": 87,
+   "our-error": 17
+  },
+  "h5py_data": {
+   "ok": 4
+  },
+  "hdf5": {
+   "h5py-cannot-read": 60,
+   "mismatch": 3,
+   "ok": 300,
+   "our-error": 103
+  },
+  "netcdf-c": {
+   "ok": 20
+  },
+  "netcdf4-python": {
+   "ok": 16,
+   "our-error": 2
+  },
+  "usnistgov_h5wasm": {
+   "ok": 5
+  },
+  "xarray-data": {
+   "ok": 4
+  }
+ },
+ "ok_files": [
+  "NCAS-CMS_pyfive/tests/compact.hdf5",
+  "NCAS-CMS_pyfive/tests/data/btreev2.hdf5",
+  "NCAS-CMS_pyfive/tests/data/chunked.hdf5",
+  "NCAS-CMS_pyfive/tests/data/compressed.hdf5",
+  "NCAS-CMS_pyfive/tests/data/compressed_v1.hdf5",
+  "NCAS-CMS_pyfive/tests/data/dataset_datatypes.hdf5",
+  "NCAS-CMS_pyfive/tests/data/dataset_multidim.hdf5",
+  "NCAS-CMS_pyfive/tests/data/dim_scales.hdf5",
+  "NCAS-CMS_pyfive/tests/data/earliest.hdf5",
+  "NCAS-CMS_pyfive/tests/data/enum_h5variable.hdf5",
+  "NCAS-CMS_pyfive/tests/data/enum_variable.hdf5",
+  "NCAS-CMS_pyfive/tests/data/enum_variable.nc",
+  "NCAS-CMS_pyfive/tests/data/enums_from_netcdf.nc",
+  "NCAS-CMS_pyfive/tests/data/fillvalue_earliest.hdf5",
+  "NCAS-CMS_pyfive/tests/data/fillvalue_latest.hdf5",
+  "NCAS-CMS_pyfive/tests/data/filter_pipeline_v2.hdf5",
+  "NCAS-CMS_pyfive/tests/data/fletcher32.hdf5",
+  "NCAS-CMS_pyfive/tests/data/fractal_heap_no_mci_rlat.nc",
+  "NCAS-CMS_pyfive/tests/data/groups.hdf5",
+  "NCAS-CMS_pyfive/tests/data/h5netcdf_test.hdf5",
+  "NCAS-CMS_pyfive/tests/data/issue23_A.nc",
+  "NCAS-CMS_pyfive/tests/data/issue23_A_contiguous.nc",
+  "NCAS-CMS_pyfive/tests/data/issue23_B.nc",
+  "NCAS-CMS_pyfive/tests/data/latest.hdf5",
+  "NCAS-CMS_pyfive/tests/data/netcdf4_classic.nc",
+  "NCAS-CMS_pyfive/tests/data/new_style_groups.hdf5",
+  "NCAS-CMS_pyfive/tests/data/noy_AERmonZ_UKESM1-0-LL_piControl_r1i1p1f2_gnz_200001-200012.nc",
+  "NCAS-CMS_pyfive/tests/data/references.hdf5",
+  "NCAS-CMS_pyfive/tests/data/resizable.hdf5",
+  "NCAS-CMS_pyfive/tests/opaque_datetime.hdf5",
+  "NCAS-CMS_pyfive/tests/opaque_fixed.hdf5",
+  "cve_hdf5/cvefiles/cve-2016-4331.h5",
+  "cve_hdf5/cvefiles/cve-2016-4332-mtime-new.h5",
+  "cve_hdf5/cvefiles/cve-2016-4332-mtime.h5",
+  "cve_hdf5/cvefiles/cve-2017-17505.h5",
+  "cve_hdf5/cvefiles/cve-2017-17506.h5",
+  "cve_hdf5/cvefiles/cve-2017-17507.h5",
+  "cve_hdf5/cvefiles/cve-2017-17508.h5",
+  "cve_hdf5/cvefiles/cve-2017-17509.h5",
+  "cve_hdf5/cvefiles/cve-2018-11202.h5",
+  "cve_hdf5/cvefiles/cve-2018-11203.h5",
+  "cve_hdf5/cvefiles/cve-2018-11204.h5",
+  "cve_hdf5/cvefiles/cve-2018-11205.h5",
+  "cve_hdf5/cvefiles/cve-2018-11206-new.h5",
+  "cve_hdf5/cvefiles/cve-2018-11207.h5",
+  "cve_hdf5/cvefiles/cve-2018-13867.h5",
+  "cve_hdf5/cvefiles/cve-2018-13869.h5",
+  "cve_hdf5/cvefiles/cve-2018-13870.h5",
+  "cve_hdf5/cvefiles/cve-2018-13871.h5",
+  "cve_hdf5/cvefiles/cve-2018-13872.h5",
+  "cve_hdf5/cvefiles/cve-2018-13873.h5",
+  "cve_hdf5/cvefiles/cve-2018-14033.h5",
+  "cve_hdf5/cvefiles/cve-2018-14034.h5",
+  "cve_hdf5/cvefiles/cve-2018-14460.h5",
+  "cve_hdf5/cvefiles/cve-2018-15671.h5",
+  "cve_hdf5/cvefiles/cve-2018-15672.h5",
+  "cve_hdf5/cvefiles/cve-2018-16438.h5",
+  "cve_hdf5/cvefiles/cve-2018-17233.h5",
+  "cve_hdf5/cvefiles/cve-2018-17234.h5",
+  "cve_hdf5/cvefiles/cve-2018-17237.h5",
+  "cve_hdf5/cvefiles/cve-2018-17432.h5",
+  "cve_hdf5/cvefiles/cve-2018-17434.h5",
+  "cve_hdf5/cvefiles/cve-2018-17435.h5",
+  "cve_hdf5/cvefiles/cve-2018-17437.h5",
+  "cve_hdf5/cvefiles/cve-2019-8396.h5",
+  "cve_hdf5/cvefiles/cve-2019-9152.h5",
+  "cve_hdf5/cvefiles/cve-2020-10811.h5",
+  "cve_hdf5/cvefiles/cve-2020-18232.h5",
+  "cve_hdf5/cvefiles/cve-2021-37501.h5",
+  "cve_hdf5/cvefiles/cve-2021-45829.h5",
+  "cve_hdf5/cvefiles/cve-2021-45833.h5",
+  "cve_hdf5/cvefiles/cve-2024-29157.h5",
+  "cve_hdf5/cvefiles/cve-2024-29158.h5",
+  "cve_hdf5/cvefiles/cve-2024-29159.h5",
+  "cve_hdf5/cvefiles/cve-2024-29160.h5",
+  "cve_hdf5/cvefiles/cve-2024-29161.h5",
+  "cve_hdf5/cvefiles/cve-2024-29162.h5",
+  "cve_hdf5/cvefiles/cve-2024-29163.h5",
+  "cve_hdf5/cvefiles/cve-2024-29165.h5",
+  "cve_hdf5/cvefiles/cve-2024-29166.h5",
+  "cve_hdf5/cvefiles/cve-2024-32605.h5",
+  "cve_hdf5/cvefiles/cve-2024-32606.h5",
+  "cve_hdf5/cvefiles/cve-2024-32607-1.h5",
+  "cve_hdf5/cvefiles/cve-2024-32607-2.h5",
+  "cve_hdf5/cvefiles/cve-2024-32608.h5",
+  "cve_hdf5/cvefiles/cve-2024-32610.h5",
+  "cve_hdf5/cvefiles/cve-2024-32611.h5",
+  "cve_hdf5/cvefiles/cve-2024-32614.h5",
+  "cve_hdf5/cvefiles/cve-2024-32615.h5",
+  "cve_hdf5/cvefiles/cve-2024-32617.h5",
+  "cve_hdf5/cvefiles/cve-2024-32619.h5",
+  "cve_hdf5/cvefiles/cve-2024-32620.h5",
+  "cve_hdf5/cvefiles/cve-2024-32621.h5",
+  "cve_hdf5/cvefiles/cve-2024-32622.h5",
+  "cve_hdf5/cvefiles/cve-2024-32624.h5",
+  "cve_hdf5/cvefiles/cve-2024-33873.h5",
+  "cve_hdf5/cvefiles/cve-2024-33875.h5",
+  "cve_hdf5/cvefiles/cve-2024-33876.h5",
+  "cve_hdf5/cvefiles/cve-2024-33877.h5",
+  "cve_hdf5/cvefiles/cve-2025-2310.h5",
+  "cve_hdf5/cvefiles/cve-2025-2924.h5",
+  "cve_hdf5/cvefiles/cve-2025-2925.h5",
+  "cve_hdf5/cvefiles/cve-2025-6269-1.h5",
+  "cve_hdf5/cvefiles/cve-2025-6269-2.h5",
+  "cve_hdf5/cvefiles/cve-2025-6269-3.h5",
+  "cve_hdf5/cvefiles/cve-2025-6269-4.h5",
+  "cve_hdf5/cvefiles/cve-2025-6516.h5",
+  "cve_hdf5/cvefiles/cve-2025-6857.h5",
+  "cve_hdf5/cvefiles/cve-2025-7067.h5",
+  "cve_hdf5/cvefiles/cve-2026-26200.h5",
+  "cve_hdf5/cvefiles/cve-2026-34734.h5",
+  "cve_hdf5/cvefiles/cve-2026-92627.h5",
+  "cve_hdf5/fuzzerfiles/gh-4431-poc-03.h5",
+  "cve_hdf5/fuzzerfiles/gh-4432-poc-05.h5",
+  "cve_hdf5/fuzzerfiles/gh-4433-poc-08.h5",
+  "cve_hdf5/fuzzerfiles/gh-4435-poc-10.h5",
+  "cve_hdf5/fuzzerfiles/gh_2649_flawed.h5",
+  "cve_hdf5/fuzzerfiles/gh_2649_plain_model.h5",
+  "h5py_data/compound-dtype-complex.h5",
+  "h5py_data/vlen_string_dset.h5",
+  "h5py_data/vlen_string_dset_utc.h5",
+  "h5py_data/vlen_string_s390x.h5",
+  "hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_bitgroom.h5",
+  "hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_granularbr.h5",
+  "hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_jpeg.h5",
+  "hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_lz4.h5",
+  "hdf5/HDF5Examples/C/H5FLT/tfiles/h5ex_d_zstd.h5",
+  "hdf5/c++/test/th5s.h5",
+  "hdf5/hl/test/testfiles/test_ds_be.h5",
+  "hdf5/hl/test/testfiles/test_ds_be_new_ref-32bit.h5",
+  "hdf5/hl/test/testfiles/test_ds_be_new_ref.h5",
+  "hdf5/hl/test/testfiles/test_ds_le.h5",
+  "hdf5/hl/test/testfiles/test_ds_le_new_ref.h5",
+  "hdf5/hl/test/testfiles/test_ld.h5",
+  "hdf5/test/testfiles/aggr.h5",
+  "hdf5/test/testfiles/bad_chunk_ndims.h5",
+  "hdf5/test/testfiles/bad_compound.h5",
+  "hdf5/test/testfiles/bad_offset.h5",
+  "hdf5/test/testfiles/be_data.h5",
+  "hdf5/test/testfiles/be_extlink1.h5",
+  "hdf5/test/testfiles/be_extlink2.h5",
+  "hdf5/test/testfiles/btree_idx_1_8.h5",
+  "hdf5/test/testfiles/charsets.h5",
+  "hdf5/test/testfiles/corrupt_stab_msg.h5",
+  "hdf5/test/testfiles/file_image_core_test.h5",
+  "hdf5/test/testfiles/filespace_1_8.h5",
+  "hdf5/test/testfiles/fill18.h5",
+  "hdf5/test/testfiles/filter_error.h5",
+  "hdf5/test/testfiles/fsm_aggr_nopersist.h5",
+  "hdf5/test/testfiles/fsm_aggr_persist.h5",
+  "hdf5/test/testfiles/group_old.h5",
+  "hdf5/test/testfiles/h5fc_ext1_f.h5",
+  "hdf5/test/testfiles/h5fc_ext1_i.h5",
+  "hdf5/test/testfiles/h5fc_ext2_if.h5",
+  "hdf5/test/testfiles/h5fc_ext2_sf.h5",
+  "hdf5/test/testfiles/h5fc_ext3_isf.h5",
+  "hdf5/test/testfiles/h5fc_ext_none.h5",
+  "hdf5/test/testfiles/le_data.h5",
+  "hdf5/test/testfiles/le_extlink1.h5",
+  "hdf5/test/testfiles/le_extlink2.h5",
+  "hdf5/test/testfiles/memleak_H5O_dtype_decode_helper_H5Odtype.h5",
+  "hdf5/test/testfiles/mergemsg.h5",
+  "hdf5/test/testfiles/noencoder.h5",
+  "hdf5/test/testfiles/none.h5",
+  "hdf5/test/testfiles/paged_nopersist.h5",
+  "hdf5/test/testfiles/paged_persist.h5",
+  "hdf5/test/testfiles/specmetaread.h5",
+  "hdf5/test/testfiles/tbad_msg_count.h5",
+  "hdf5/test/testfiles/tbogus.h5",
+  "hdf5/test/testfiles/th5s.h5",
+  "hdf5/test/testfiles/tlayouto.h5",
+  "hdf5/test/testfiles/tmisc38a.h5",
+  "hdf5/test/testfiles/tmisc38b.h5",
+  "hdf5/test/testfiles/tnullspace.h5",
+  "hdf5/test/testfiles/tsizeslheap.h5",
+  "hdf5/tools/test/testfiles/bigendian/tdset2.h5",
+  "hdf5/tools/test/testfiles/binin32.h5",
+  "hdf5/tools/test/testfiles/binin8w.h5",
+  "hdf5/tools/test/testfiles/bounds_latest_latest.h5",
+  "hdf5/tools/test/testfiles/charsets.h5",
+  "hdf5/tools/test/testfiles/compounds_array_vlen1.h5",
+  "hdf5/tools/test/testfiles/compounds_array_vlen2.h5",
+  "hdf5/tools/test/testfiles/err_attr_dspace.h5",
+  "hdf5/tools/test/testfiles/file_space.h5",
+  "hdf5/tools/test/testfiles/filter_fail.h5",
+  "hdf5/tools/test/testfiles/h5clear_fsm_persist_equal.h5",
+  "hdf5/tools/test/testfiles/h5clear_fsm_persist_noclose.h5",
+  "hdf5/tools/test/testfiles/h5clear_sec2_v0.h5",
+  "hdf5/tools/test/testfiles/h5clear_sec2_v2.h5",
+  "hdf5/tools/test/testfiles/h5copy_extlinks_src.h5",
+  "hdf5/tools/test/testfiles/h5copy_extlinks_trg.h5",
+  "hdf5/tools/test/testfiles/h5copy_ref.h5",
+  "hdf5/tools/test/testfiles/h5copytst.h5",
+  "hdf5/tools/test/testfiles/h5copytst_new.h5",
+  "hdf5/tools/test/testfiles/h5diff_attr1.h5",
+  "hdf5/tools/test/testfiles/h5diff_attr2.h5",
+  "hdf5/tools/test/testfiles/h5diff_attr3.h5",
+  "hdf5/tools/test/testfiles/h5diff_attr_v_level1.h5",
+  "hdf5/tools/test/testfiles/h5diff_attr_v_level2.h5",
+  "hdf5/tools/test/testfiles/h5diff_basic1.h5",
+  "hdf5/tools/test/testfiles/h5diff_basic2.h5",
+  "hdf5/tools/test/testfiles/h5diff_comp_vl_strs.h5",
+  "hdf5/tools/test/testfiles/h5diff_danglelinks1.h5",
+  "hdf5/tools/test/testfiles/h5diff_danglelinks2.h5",
+  "hdf5/tools/test/testfiles/h5diff_dset1.h5",
+  "hdf5/tools/test/testfiles/h5diff_dset2.h5",
+  "hdf5/tools/test/testfiles/h5diff_dset3.h5",
+  "hdf5/tools/test/testfiles/h5diff_dset_zero_dim_size1.h5",
+  "hdf5/tools/test/testfiles/h5diff_dset_zero_dim_size2.h5",
+  "hdf5/tools/test/testfiles/h5diff_dtypes.h5",
+  "hdf5/tools/test/testfiles/h5diff_empty.h5",
+  "hdf5/tools/test/testfiles/h5diff_enum_invalid_values.h5",
+  "hdf5/tools/test/testfiles/h5diff_eps1.h5",
+  "hdf5/tools/test/testfiles/h5diff_eps2.h5",
+  "hdf5/tools/test/testfiles/h5diff_exclude1-1.h5",
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+  "hdf5/tools/test/testfiles/h5diff_exclude3-1.h5",
+  "hdf5/tools/test/testfiles/h5diff_exclude3-2.h5",
+  "hdf5/tools/test/testfiles/h5diff_ext2softlink_src.h5",
+  "hdf5/tools/test/testfiles/h5diff_ext2softlink_trg.h5",
+  "hdf5/tools/test/testfiles/h5diff_extlink_src.h5",
+  "hdf5/tools/test/testfiles/h5diff_extlink_trg.h5",
+  "hdf5/tools/test/testfiles/h5diff_grp_recurse1.h5",
+  "hdf5/tools/test/testfiles/h5diff_grp_recurse2.h5",
+  "hdf5/tools/test/testfiles/h5diff_grp_recurse_ext1.h5",
+  "hdf5/tools/test/testfiles/h5diff_grp_recurse_ext2-1.h5",
+  "hdf5/tools/test/testfiles/h5diff_grp_recurse_ext2-2.h5",
+  "hdf5/tools/test/testfiles/h5diff_grp_recurse_ext2-3.h5",
+  "hdf5/tools/test/testfiles/h5diff_hyper1.h5",
+  "hdf5/tools/test/testfiles/h5diff_hyper2.h5",
+  "hdf5/tools/test/testfiles/h5diff_linked_softlink.h5",
+  "hdf5/tools/test/testfiles/h5diff_links.h5",
+  "hdf5/tools/test/testfiles/h5diff_onion_dset_1d.h5",
+  "hdf5/tools/test/testfiles/h5diff_onion_dset_ext.h5",
+  "hdf5/tools/test/testfiles/h5diff_onion_objs.h5",
+  "hdf5/tools/test/testfiles/h5diff_softlinks.h5",
+  "hdf5/tools/test/testfiles/h5diff_strings1.h5",
+  "hdf5/tools/test/testfiles/h5diff_strings2.h5",
+  "hdf5/tools/test/testfiles/h5fc_edge_v3.h5",
+  "hdf5/tools/test/testfiles/h5fc_err_level.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext1_f.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext1_i.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext1_s.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext2_if.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext2_is.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext2_sf.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext3_isf.h5",
+  "hdf5/tools/test/testfiles/h5fc_ext_none.h5",
+  "hdf5/tools/test/testfiles/h5fc_non_v3.h5",
+  "hdf5/tools/test/testfiles/h5repack_CVE-2018-14460.h5",
+  "hdf5/tools/test/testfiles/h5repack_CVE-2018-17432.h5",
+  "hdf5/tools/test/testfiles/h5repack_aggr.h5",
+  "hdf5/tools/test/testfiles/h5repack_attr.h5",
+  "hdf5/tools/test/testfiles/h5repack_attr_refs.h5",
+  "hdf5/tools/test/testfiles/h5repack_deflate.h5",
+  "hdf5/tools/test/testfiles/h5repack_early.h5",
+  "hdf5/tools/test/testfiles/h5repack_ext.h5",
+  "hdf5/tools/test/testfiles/h5repack_f32le.h5",
+  "hdf5/tools/test/testfiles/h5repack_f32le_ex.h5",
+  "hdf5/tools/test/testfiles/h5repack_fill.h5",
+  "hdf5/tools/test/testfiles/h5repack_filters.h5",
+  "hdf5/tools/test/testfiles/h5repack_fletcher.h5",
+  "hdf5/tools/test/testfiles/h5repack_fsm_aggr_nopersist.h5",
+  "hdf5/tools/test/testfiles/h5repack_fsm_aggr_persist.h5",
+  "hdf5/tools/test/testfiles/h5repack_hlink.h5",
+  "hdf5/tools/test/testfiles/h5repack_int32le_1d.h5",
+  "hdf5/tools/test/testfiles/h5repack_int32le_1d_ex.h5",
+  "hdf5/tools/test/testfiles/h5repack_int32le_2d.h5",
+  "hdf5/tools/test/testfiles/h5repack_int32le_2d_ex.h5",
+  "hdf5/tools/test/testfiles/h5repack_int32le_3d.h5",
+  "hdf5/tools/test/testfiles/h5repack_int32le_3d_ex.h5",
+  "hdf5/tools/test/testfiles/h5repack_layout.UD.h5",
+  "hdf5/tools/test/testfiles/h5repack_layout.h5",
+  "hdf5/tools/test/testfiles/h5repack_layout2.h5",
+  "hdf5/tools/test/testfiles/h5repack_layout3.h5",
+  "hdf5/tools/test/testfiles/h5repack_layouto.h5",
+  "hdf5/tools/test/testfiles/h5repack_named_dtypes.h5",
+  "hdf5/tools/test/testfiles/h5repack_nbit.h5",
+  "hdf5/tools/test/testfiles/h5repack_nested_8bit_enum.h5",
+  "hdf5/tools/test/testfiles/h5repack_nested_8bit_enum_deflated.h5",
+  "hdf5/tools/test/testfiles/h5repack_none.h5",
+  "hdf5/tools/test/testfiles/h5repack_objs.h5",
+  "hdf5/tools/test/testfiles/h5repack_paged_nopersist.h5",
+  "hdf5/tools/test/testfiles/h5repack_paged_persist.h5",
+  "hdf5/tools/test/testfiles/h5repack_refs.h5",
+  "hdf5/tools/test/testfiles/h5repack_shuffle.h5",
+  "hdf5/tools/test/testfiles/h5repack_soffset.h5",
+  "hdf5/tools/test/testfiles/h5repack_szip.h5",
+  "hdf5/tools/test/testfiles/h5repack_uint8be.h5",
+  "hdf5/tools/test/testfiles/h5repack_uint8be_ex.h5",
+  "hdf5/tools/test/testfiles/h5stat_err_old_fill.h5",
+  "hdf5/tools/test/testfiles/h5stat_err_old_layout.h5",
+  "hdf5/tools/test/testfiles/h5stat_filters.h5",
+  "hdf5/tools/test/testfiles/h5stat_idx.h5",
+  "hdf5/tools/test/testfiles/h5stat_threshold.h5",
+  "hdf5/tools/test/testfiles/mod_h5clear_mdc_image.h5",
+  "hdf5/tools/test/testfiles/non_comparables1.h5",
+  "hdf5/tools/test/testfiles/non_comparables2.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext1_f.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext1_i.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext1_s.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext2_if.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext2_is.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext2_sf.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext3_isf.h5",
+  "hdf5/tools/test/testfiles/old_h5fc_ext_none.h5",
+  "hdf5/tools/test/testfiles/packedbits.h5",
+  "hdf5/tools/test/testfiles/t128bit_float.h5",
+  "hdf5/tools/test/testfiles/tCVE-2021-37501_attr_decode.h5",
+  "hdf5/tools/test/testfiles/tCVE_2018_11206_fill_new.h5",
+  "hdf5/tools/test/testfiles/taindices.h5",
+  "hdf5/tools/test/testfiles/tarray1_big.h5",
+  "hdf5/tools/test/testfiles/tarray8.h5",
+  "hdf5/tools/test/testfiles/tattr.h5",
+  "hdf5/tools/test/testfiles/tattr2.h5",
+  "hdf5/tools/test/testfiles/tattr4_be.h5",
+  "hdf5/tools/test/testfiles/tattrintsize.h5",
+  "hdf5/tools/test/testfiles/tattrreg.h5",
+  "hdf5/tools/test/testfiles/tbfloat16.h5",
+  "hdf5/tools/test/testfiles/tbfloat16_be.h5",
+  "hdf5/tools/test/testfiles/tbigdims.h5",
+  "hdf5/tools/test/testfiles/tbinary.h5",
+  "hdf5/tools/test/testfiles/tbitnopaque.h5",
+  "hdf5/tools/test/testfiles/tcmpdattrintsize.h5",
+  "hdf5/tools/test/testfiles/tcmpdintarray.h5",
+  "hdf5/tools/test/testfiles/tcmpdints.h5",
+  "hdf5/tools/test/testfiles/tcmpdintsize.h5",
+  "hdf5/tools/test/testfiles/tcomplex.h5",
+  "hdf5/tools/test/testfiles/tcompound_complex2.h5",
+  "hdf5/tools/test/testfiles/tdset.h5",
+  "hdf5/tools/test/testfiles/tdset2.h5",
+  "hdf5/tools/test/testfiles/tdset_idx.h5",
+  "hdf5/tools/test/testfiles/textlink.h5",
+  "hdf5/tools/test/testfiles/textlinkfar.h5",
+  "hdf5/tools/test/testfiles/textlinksrc.h5",
+  "hdf5/tools/test/testfiles/textlinktar.h5",
+  "hdf5/tools/test/testfiles/textpfe.h5",
+  "hdf5/tools/test/testfiles/tfcontents2.h5",
+  "hdf5/tools/test/testfiles/tfilters.h5",
+  "hdf5/tools/test/testfiles/tfloat16.h5",
+  "hdf5/tools/test/testfiles/tfloat16_be.h5",
+  "hdf5/tools/test/testfiles/tfloat4.h5",
+  "hdf5/tools/test/testfiles/tfloat6.h5",
+  "hdf5/tools/test/testfiles/tfloat8.h5",
+  "hdf5/tools/test/testfiles/tfloatsattrs.h5",
+  "hdf5/tools/test/testfiles/tfpformat.h5",
+  "hdf5/tools/test/testfiles/tfvalues.h5",
+  "hdf5/tools/test/testfiles/tgroup.h5",
+  "hdf5/tools/test/testfiles/tgrp_comments.h5",
+  "hdf5/tools/test/testfiles/tgrpnullspace.h5",
+  "hdf5/tools/test/testfiles/thlink.h5",
+  "hdf5/tools/test/testfiles/thyperslab.h5",
+  "hdf5/tools/test/testfiles/tintascii.h5",
+  "hdf5/tools/test/testfiles/tints4dims.h5",
+  "hdf5/tools/test/testfiles/tintsattrs.h5",
+  "hdf5/tools/test/testfiles/tintsnodata.h5",
+  "hdf5/tools/test/testfiles/tlarge_objname.h5",
+  "hdf5/tools/test/testfiles/tldouble.h5",
+  "hdf5/tools/test/testfiles/tldouble_scalar.h5",
+  "hdf5/tools/test/testfiles/tlonglinks.h5",
+  "hdf5/tools/test/testfiles/tloop.h5",
+  "hdf5/tools/test/testfiles/tnamed_dtype_attr.h5",
+  "hdf5/tools/test/testfiles/tnestedcmpddt.h5",
+  "hdf5/tools/test/testfiles/tno-subset.h5",
+  "hdf5/tools/test/testfiles/tnullspace.h5",
+  "hdf5/tools/test/testfiles/torderattr.h5",
+  "hdf5/tools/test/testfiles/tordergr.h5",
+  "hdf5/tools/test/testfiles/trefer_attr.h5",
+  "hdf5/tools/test/testfiles/trefer_compat.h5",
+  "hdf5/tools/test/testfiles/trefer_ext1.h5",
+  "hdf5/tools/test/testfiles/trefer_ext2.h5",
+  "hdf5/tools/test/testfiles/trefer_grp.h5",
+  "hdf5/tools/test/testfiles/trefer_obj.h5",
+  "hdf5/tools/test/testfiles/trefer_obj_del.h5",
+  "hdf5/tools/test/testfiles/trefer_param.h5",
+  "hdf5/tools/test/testfiles/trefer_reg.h5",
+  "hdf5/tools/test/testfiles/trefer_reg_1d.h5",
+  "hdf5/tools/test/testfiles/tscalarattrintsize.h5",
+  "hdf5/tools/test/testfiles/tscalarintattrsize.h5",
+  "hdf5/tools/test/testfiles/tscalarintsize.h5",
+  "hdf5/tools/test/testfiles/tscalarstring.h5",
+  "hdf5/tools/test/testfiles/tslink.h5",
+  "hdf5/tools/test/testfiles/tsoftlinks.h5",
+  "hdf5/tools/test/testfiles/tst_onion_dset_1d.h5",
+  "hdf5/tools/test/testfiles/tst_onion_dset_ext.h5",
+  "hdf5/tools/test/testfiles/tst_onion_objs.h5",
+  "hdf5/tools/test/testfiles/tstr3.h5",
+  "hdf5/tools/test/testfiles/tudfilter.h5",
+  "hdf5/tools/test/testfiles/tudfilter2.h5",
+  "hdf5/tools/test/testfiles/tvlenstr_array.h5",
+  "hdf5/tools/test/testfiles/tvlstr.h5",
+  "hdf5/tools/test/testfiles/tvms.h5",
+  "hdf5/tools/test/testfiles/txtstr.h5",
+  "hdf5/tools/test/testfiles/vds/1_a.h5",
+  "hdf5/tools/test/testfiles/vds/1_b.h5",
+  "hdf5/tools/test/testfiles/vds/1_c.h5",
+  "hdf5/tools/test/testfiles/vds/1_d.h5",
+  "hdf5/tools/test/testfiles/vds/1_e.h5",
+  "hdf5/tools/test/testfiles/vds/1_f.h5",
+  "hdf5/tools/test/testfiles/vds/2_a.h5",
+  "hdf5/tools/test/testfiles/vds/2_b.h5",
+  "hdf5/tools/test/testfiles/vds/2_c.h5",
+  "hdf5/tools/test/testfiles/vds/2_d.h5",
+  "hdf5/tools/test/testfiles/vds/2_e.h5",
+  "hdf5/tools/test/testfiles/vds/4_0.h5",
+  "hdf5/tools/test/testfiles/vds/4_1.h5",
+  "hdf5/tools/test/testfiles/vds/4_2.h5",
+  "hdf5/tools/test/testfiles/vds/5_a.h5",
+  "hdf5/tools/test/testfiles/vds/5_b.h5",
+  "hdf5/tools/test/testfiles/vds/5_c.h5",
+  "hdf5/tools/test/testfiles/vds/a.h5",
+  "hdf5/tools/test/testfiles/vds/b.h5",
+  "hdf5/tools/test/testfiles/vds/c.h5",
+  "hdf5/tools/test/testfiles/vds/d.h5",
+  "hdf5/tools/test/testfiles/vds/f-0.h5",
+  "hdf5/tools/test/testfiles/vds/f-3.h5",
+  "hdf5/tools/test/testfiles/xml/test35.nc",
+  "hdf5/tools/test/testfiles/xml/tloop2.h5",
+  "hdf5/tools/test/testfiles/xml/topaque.h5",
+  "hdf5/tools/test/testfiles/zerodim.h5",
+  "netcdf-c/h5_test/ref_tst_h_compounds.h5",
+  "netcdf-c/h5_test/ref_tst_h_compounds2.h5",
+  "netcdf-c/nc_test4/ref_hdf5_compat1.nc",
+  "netcdf-c/nc_test4/ref_hdf5_compat2.nc",
+  "netcdf-c/nc_test4/ref_hdf5_compat3.nc",
+  "netcdf-c/nc_test4/ref_szip.h5",
+  "netcdf-c/nc_test4/ref_tst_compounds.nc",
+  "netcdf-c/nc_test4/ref_tst_dims.nc",
+  "netcdf-c/nc_test4/ref_tst_interops4.nc",
+  "netcdf-c/nc_test4/ref_tst_xplatform2_1.nc",
+  "netcdf-c/nc_test4/ref_tst_xplatform2_2.nc",
+  "netcdf-c/nc_test4/tdset.h5",
+  "netcdf-c/ncdump/ref_nc_test_netcdf4_4_0.nc",
+  "netcdf-c/ncdump/ref_no_ncproperty.nc",
+  "netcdf-c/ncdump/ref_provenance_v1.nc",
+  "netcdf-c/ncdump/ref_test_corrupt_magic.nc",
+  "netcdf-c/ncdump/ref_tst_compounds2.nc",
+  "netcdf-c/ncdump/ref_tst_compounds3.nc",
+  "netcdf-c/ncdump/ref_tst_compounds4.nc",
+  "netcdf-c/ncdump/ref_tst_irish_rover.nc",
+  "netcdf4-python/examples/data/prmsl.2000.nc",
+  "netcdf4-python/examples/data/prmsl.2001.nc",
+  "netcdf4-python/examples/data/prmsl.2002.nc",
+  "netcdf4-python/examples/data/prmsl.2003.nc",
+  "netcdf4-python/examples/data/prmsl.2004.nc",
+  "netcdf4-python/examples/data/prmsl.2005.nc",
+  "netcdf4-python/examples/data/prmsl.2006.nc",
+  "netcdf4-python/examples/data/prmsl.2007.nc",
+  "netcdf4-python/examples/data/prmsl.2008.nc",
+  "netcdf4-python/examples/data/prmsl.2009.nc",
+  "netcdf4-python/examples/data/prmsl.2010.nc",
+  "netcdf4-python/examples/data/prmsl.2011.nc",
+  "netcdf4-python/examples/data/rtofs_glo_3dz_f006_6hrly_reg3.nc",
+  "netcdf4-python/test/20171025_2056.Cloud_Top_Height.nc",
+  "netcdf4-python/test/issue1152.nc",
+  "netcdf4-python/test/test_gold.nc",
+  "usnistgov_h5wasm/test/array.h5",
+  "usnistgov_h5wasm/test/compressed.h5",
+  "usnistgov_h5wasm/test/empty.h5",
+  "usnistgov_h5wasm/test/float16.h5",
+  "usnistgov_h5wasm/test/vlen.h5",
+  "xarray-data/ROMS_example.nc",
+  "xarray-data/basin_mask.nc",
+  "xarray-data/imerghh_730.hdf5",
+  "xarray-data/precipitation.nc4"
+ ]
+}

docs/known-issues.md

@@ -57,6 +57,16 @@ After it, 448 read correctly and 23 differ. Of those 23:
   byte-swapped in h5py, and h5dump agrees with us.
 - The rest are object or attribute listing differences.
 
+**Update 2026-09-25:** the sweep is now in the repo (`conformance/run.sh`,
+corpora pinned by commit) and its current numbers are in `CONFORMANCE.md`,
+regenerated nightly by `.gitea/workflows/conformance.yml`. The probe now
+compares N-Bit floats as the values libhdf5 converts them to, so the N-Bit
+files above count as identical. Its file list is defined by
+`conformance/list_files.py` (697 files: netCDF classic files are left out,
+and 11 HDF5 files the ad-hoc sweep missed are in). On 42b81d9: 467 identical,
+123 our-error, 15 mismatch (2 are the h5py bug above), 92 that libhdf5 cannot
+read, and no panics, hangs or crashes.
+
 There were no panics, hangs or crashes before or after, including on all 147
 CVE and fuzzer files. On some of those files, h5dump 1.14.6 and h5py/HDF5 2.0
 segfault or abort.