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11 Commits
Author SHA1 Message Date
Omar Sobh 7984e65174 research_topics::create: bag 8 args into a NewTopic struct (fixes clippy)
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The prior signature took (pool, workspace_id, title, description,
outcome_kind, topology_kind, repo_id, created_by) — 8 args, one
over the clippy::too_many_arguments ceiling and blocking CI.

Refactor to a NewTopic<'a> input struct mirroring the NewLoop /
NewSubTopology pattern the codebase already uses. Wizard-side
additions like a repo commit branch land as struct fields
instead of cascading into every call site.
2026-07-09 03:52:59 -07:00
Omar Sobh 3465bb7a6d research: persist bound repo + shallow-clone on start_topic
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This is the minimum viable version of the "agents actually work on
a repo" architecture. Full vision (isolated ZeroClaw container per
topic, dynamic agent provisioning inside, pause/resume, commit
gate) is real weeks of work — this closes the first, most-visible
gap so the ClawHDF5 topic can actually run against its codebase.

Backend

- Migration 0037: research_topics gets repo_id UUID (nullable, FK
  to repos ON DELETE SET NULL) and repo_workspace_path TEXT for
  the on-disk checkout location. Index on repo_id when set.

- research_topics::create takes repo_id: Option<Uuid>. get + list
  select it and repo_workspace_path. set_repo_workspace_path
  persists the path once the first clone lands.

- CreateTopicRequest accepts `repo: Option<TopicRepoRef>` — the
  same denormalized shape the wizard already sends. Only repo_id
  is authoritative; other fields are ignored (dead_code-allowed
  so serde still deserializes the full body).

- start_topic branches on topic.repo_id. When set, it calls
  ensure_repo_workspace:
    · resolves repo.clone_url + repo.default_branch
    · target path = CLAWMATES_RESEARCH_WORKSPACE_ROOT
                    // <topic_id> // repo (defaults under $TMPDIR)
    · runs `git clone --depth 1 --single-branch --branch <b>` via
      tokio::process. Reuses the checkout if .git already exists.
    · persists the path so re-starts skip the clone
    · runs `git ls-files` to sample the tree (first 60 entries,
      total count reported honestly so the prompt doesn't lie
      about coverage)
  All best-effort — a clone failure logs but still starts the run
  without repo context rather than aborting.

- build_coordinator_task takes Option<&RepoContext>. When present,
  the framing gets a REPO block (slug / path / branch / file
  sample) and a USING THE REPO section instructing the coordinator
  to ground every recommendation in a concrete file reference and
  never fabricate paths. The per-topology bodies are unchanged —
  the repo guidance sits above them so it applies to every shape.

What this unblocks / doesn't unblock

Unblocks: The coordinator prompt now knows the repo exists, where
it lives on disk, and what's in it. Even without file-editing
tools wired to the checkout, the coordinator can point spokes at
concrete modules and the final artifact can reference real files.
For a spec-shaped outcome like ClawHDF5's, that's the difference
between abstract advice and a spec grounded in the actual crates.

Does NOT unblock: The agents themselves editing files, running
tests, or committing. That requires either mounting the checkout
into the ZeroClaw sandbox or exposing a new MCP tool for
repo-scoped file ops — separate follow-up.
2026-07-08 21:38:00 -07:00
Omar Sobh 7c1af2e070 research: pipeline-running signal + spinners so users aren't guessing
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The prior flow was ambiguous: after hitting Start research, status
flipped to "processing" and a "Submit for review" button appeared
immediately with no indication that anything was actually running.
Users had to guess whether the pipeline was working or stalled.

Backend surfaces the truth as a signal:
- new topology_runs::active_runs_for_research_topic counts
  queued+running runs whose research_topic_id matches
- TopicDetail includes runs_in_flight: i64 alongside the existing
  status field, so the canvas can distinguish "pipeline still
  working" from "runner stalled".

ResearchCanvas is now honest about state:
- while runs_in_flight > 0, the header status pill grows a cyan
  "N runs in flight" badge with an inline SVG spinner
- the stage-explainer card turns cyan-bordered and shows a
  "pipeline is running" hint, plus copy pointing the user at the
  Agents tier where each teammate's activity streams live
- the "Submit for review (manual)" button is HIDDEN while any run
  is in flight — it's an escape hatch for stalled runs only, not
  the happy-path action. It reappears if runs_in_flight drops to
  zero but the topic is still marked processing, so a stalled
  runner can still be nudged along.
- the canvas polls getTopic every 4s while status is processing/
  publishing or runs_in_flight > 0, so the spinner + outcome swap
  in automatically when the pipeline completes.

ResearchList sidebar:
- each row's status dot becomes a spinner when the topic's status
  is processing or publishing, matching the canvas at a glance
- the list also polls every 6s while ANY topic is active, so
  transitions land in the sidebar without waiting on a parent bump.
  The poll is gated on a derived boolean to avoid effect thrash.

Follow-up: same pattern belongs on LoopsList / LoopsCanvas for
loop iterations in flight — same signal (queued+running runs per
loop) but not wired here.
2026-07-08 18:36:34 -07:00
Omar Sobh 316cdbf929 research sidebar: delete-with-confirm per topic
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Mirror the row-level delete affordance the loops sidebar already
has. Loops was wired earlier; research had a bare title-only card
with no way to remove a stale topic.

- cm-db: research_topics::delete cascades via existing FK rules
  (research_topic_agents, research_publish_approvals, and the new
  research_outcomes all CASCADE on topic_id; topology_runs's
  research_topic_id back-ref is SET NULL so historical runs stay).
- cm-api: DELETE /api/research/{id} → 204. Idempotent.
- Frontend: deleteTopic helper. ResearchList row is now a card
  with the existing title/status/outcome header plus a trash icon
  that flips the card into an inline "Delete topic + all outcomes?"
  confirm strip. Confirm → red Delete / gray Cancel. If the
  deleted topic was selected, selection clears; local counter
  bumps the list refetch without waiting on a parent.
2026-07-08 17:21:51 -07:00
Omar Sobh a2d3d85ebe research pipeline v2: topology-aware start + persisted draft
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Three connected changes that turn "Start research" from a status
flip into a real pipeline that produces a reviewable artifact:

- Migration 0036: adds research_topics.topology_kind (default
  'hub_spoke') and a new research_outcomes table
  (id, topic_id, version DESC, body_md, produced_by_run_id, created_at)
  so each run's final synthesis is versioned and persistent.

- Wizard now has a topology picker in the Outcome step —
  hub_spoke / pipeline / hierarchical / star_moe — with copy that
  steers users to the right shape (Pipeline for research → distill
  → analyze → implement rosters, hub_spoke for the coordinator-
  and-specialists default).

- start_topic reads the chosen topology_kind, parses it into a
  cm_topology::TopologyKind, and dispatches a per-shape coordinator
  prompt via build_coordinator_task. Pipeline explicitly tells
  stage 1 not to write the final artifact and propagates a
  "final stage MUST emit a complete markdown document with
  measurable acceptance criteria" instruction downstream. The
  graph builder is called with the topology the user actually
  picked instead of hard-coded HubSpoke.

- topology_worker::freeze_research_outcome fires after every
  successful complete(). It looks up research_topic_id on the run;
  if set and final_output is non-empty, it inserts a new
  research_outcomes row (version auto-derived server-side via
  coalesce(max(version), 0) + 1). Best-effort — a DB hiccup logs
  but doesn't fail the run.

- TopicDetail now includes topology_kind and latest_outcome.
  ResearchCanvas swaps in the outcome's body_md (rendered as
  pre-wrap markdown, versioned header, produced-at timestamp)
  whenever an outcome exists; the original prompt collapses into
  an "Original prompt" <details> below so it's still one click
  away. Pre-run topics still show the description as before.

Follow-ups still open: reject-with-revision loop feeding the
coordinator, publishing → published transition + real artifact
export (md / pdf), and an approvals inbox surface for reviewers.
2026-07-08 17:13:46 -07:00
Omar Sobh 7e2b02d8bb research: wire start_topic to actually run the pipeline
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The prior start_topic only flipped the status column — no work was
enqueued. Now clicking "Start research" actually launches the
assigned agents through the orchestrator.

- start_topic loads the topic + its research_topic_agents, picks a
  coordinator (first slot with role_slot containing "coordinator";
  else the first slot), and swaps it to index 0.
- Builds a hub_spoke topology graph via cm_topology::build with
  roles = [coordinator, spoke1, spoke2, …]. hub_spoke wires edges
  from the hub to every spoke and back, so the coordinator can
  address any specialist per turn.
- Assembles a coordinator prompt from the topic's title,
  description, outcome_kind, and a roster line for each teammate —
  so the coordinator knows who's on the team and what each does.
- Enqueues via a new topology_runs helper
  enqueue_run_for_research_topic that stores research_topic_id on
  the run row. `topology_worker::maybe_transition_research_topic`
  → `notify_run_completed` already picks up on that back-ref and
  flips the topic processing → reviewing when the last run
  terminates — that path was dead code until now.
- Per-agent activity streams into each claw's card for free:
  the orchestrator journals turn events into run_events; the
  existing /api/world/live SSE normalizer emits
  agent.reasoning.delta / agent.tool.call / agent.task.update
  keyed by agent id, which ClawCommandCenter is already
  subscribed to.

The `published` terminal state is still unreached (that's the
"publishing → published + artifact" step from the earlier
walkthrough — separate follow-up).
2026-07-08 16:25:24 -07:00
Omar Sobh 81a436d221 research canvas: wider rail + stage explainer + 409 fix
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Three connected fixes from a single session's feedback:

- Structure rail widened from 60→76 px, tabs 42→58 px wide with a
  bit of left padding so labels ("Research", "Visualizations") no
  longer bump against the active-tab indicator strip.
- Research canvas: each stage now shows a small "STAGE · <status>"
  card explaining what state the topic is in and a "Next → …" hint
  describing what the primary button will do. No more guessing
  which of standby/processing/reviewing/publishing means what.
- Request-publish 409 fix:
    - Backend TopicDetail now includes has_pending_publish_request
      (SELECTs pending_for_topic when the topic loads). Frontend
      TopicDetail interface + ResearchCanvas honor the flag: when
      an approval is already pending the "Request publish" button
      is replaced with an amber "Awaiting reviewer approval" pill,
      so double-clicks can't 409 in the first place.
    - runAction() also catches 409 as a signal-of-success (the
      user's intent — "queue for approval" — is satisfied by the
      first attempt), refetches the topic, and lets the new
      awaiting-approval card render instead of surfacing a scary
      error to the user.
2026-07-08 15:59:04 -07:00
Omar Sobh 8a4e222aec research: auto-transition processing → reviewing on last run
Hooks the topology_worker's post-terminal path into a new
notify_run_completed repo helper that atomically transitions the topic
processing → reviewing when the completed run has research_topic_id set
AND no siblings for that topic are still queued or running. Guarded on
status='processing' so a retry, a re-fire, or a topic already past
processing are all no-ops. Best-effort at the worker; DB hiccups are
logged and never fail the run.

The manual /submit-review endpoint stays as an escape hatch for topics
that end up parked in processing with nothing to complete (updated the
doc comment).
2026-07-06 12:32:18 -07:00
Omar Sobh 973eeb272e research: publish approval gate + explicit state transitions
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Fourth commit of the Research + Loops arc. Completes the state machine
for research topics with the publish approval gate the spec asked for.

Migration 0032 — research_publish_approvals
  Dedicated small table (id, workspace_id, topic_id, requested_by,
  status, decided_by/at, created_at). Keeping it separate from the
  existing `approvals` table (0001) because that one is tightly coupled
  to gated tool calls inside an agent run — session_key + run_id +
  action_type + category + payload + preview + requested_by_agent, all
  NOT NULL. Forcing those nullable would ripple through cm_safety;
  cleaner to give publish approvals their own two-transition state
  machine.

New endpoints
  POST /api/research/:id/submit-review               processing → reviewing
                                                     (v1 caller-driven; the
                                                     orchestrator hook comes
                                                     when we wire actual runs)
  POST /api/research/:id/request-publish             creates a pending
                                                     approval. Rejects with
                                                     409 if the topic already
                                                     has one open.
  GET  /api/research/publish-approvals               list workspace's pending
  POST /api/research/publish-approvals/:id/approve   flips approval to
                                                     approved + transitions
                                                     the topic
                                                     reviewing → publishing
                                                     (which stamps
                                                     published_at)
  POST /api/research/publish-approvals/:id/reject    stays in reviewing; new
                                                     requests allowed

The approve/reject write is an atomic UPDATE ... WHERE status = 'pending';
the decide() repo function returns whether the caller won the race so
concurrent double-approves collapse to a single topic transition.

State machine after this commit:
  standby ─POST /start─▶ processing ─POST /submit-review─▶ reviewing
    ─POST /request-publish + approve─▶ publishing ─(future: artifact
    assembly)─▶ published
2026-07-06 06:21:29 -07:00
Omar Sobh 4ffcb3d652 chore: cargo fmt --all — clean up research.rs formatting
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2026-07-06 04:28:30 -07:00
Omar Sobh fb047879c2 research: backend routes + repo + wizard refine (behind /api/research)
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Second commit of the Research + Loops arc. Builds on 0030 by lighting up
the container CRUD, the agent-slot attach/detach, the standby→processing
transition, and the wizard's one-shot LLM refine.

  GET    /api/research                     list workspace's topics
  POST   /api/research                     create (accepts wizard output)
  GET    /api/research/:id                 detail (topic + attached agents)
  PATCH  /api/research/:id                 update non-status fields
  POST   /api/research/:id/agents          attach agent (idempotent)
  DELETE /api/research/:id/agents/:agent   detach
  POST   /api/research/:id/start           standby → processing
  POST   /api/research/wizard/refine       one-shot LLM refine

The refine endpoint accumulates the workspace's default LLM provider's
stream into a JSON object (`{title, description}`) with the tight system
prompt at the top of the module. Same provider routing as agent runs
(via runtime.provider()), so a workspace already using GLM/Kimi gets it
for free.

State machine's remaining transitions (processing → reviewing on last
run_completed; reviewing → publishing via approvals gate) land with the
orchestrator hookup + approvals extension. Publish approval and loops
are separate commits still to come.

Adds cm-llm as a direct cm-api dep (previously only pulled transitively
via cm-runtime) so the refine endpoint can build a ChatRequest. Uses
sqlx::query! for compile-time verification; .sqlx cache generated on
morpheus against a fresh migrated DB.
2026-07-06 04:27:17 -07:00